A comparison of gene expression and DNA methylation patterns across tissues and species

LE Blake, J Roux, I Hernando-Herraez… - Genome …, 2020 - genome.cshlp.org
Previously published comparative functional genomic data sets from primates using frozen
tissue samples, including many data sets from our own group, were often collected and …

[HTML][HTML] Tissue-specific DNA methylation is conserved across human, mouse, and rat, and driven by primary sequence conservation

J Zhou, RL Sears, X Xing, B Zhang, D Li… - BMC genomics, 2017 - Springer
Background Uncovering mechanisms of epigenome evolution is an essential step towards
understanding the evolution of different cellular phenotypes. While studies have confirmed …

[HTML][HTML] A genome-wide study of DNA methylation patterns and gene expression levels in multiple human and chimpanzee tissues

AA Pai, JT Bell, JC Marioni, JK Pritchard, Y Gilad - PLoS genetics, 2011 - journals.plos.org
The modification of DNA by methylation is an important epigenetic mechanism that affects
the spatial and temporal regulation of gene expression. Methylation patterns have been …

Worldwide patterns of human epigenetic variation

O Carja, JL MacIsaac, SM Mah, BM Henn… - Nature ecology & …, 2017 - nature.com
DNA methylation is an epigenetic modification, influenced by both genetic and
environmental variation, that plays a key role in transcriptional regulation and many …

[HTML][HTML] Simultaneous profiling of transcriptome and DNA methylome from a single cell

Y Hu, K Huang, Q An, G Du, G Hu, J Xue, X Zhu… - Genome biology, 2016 - Springer
Background Single-cell transcriptome and single-cell methylome technologies have become
powerful tools to study RNA and DNA methylation profiles of single cells at a genome-wide …

DNA methylation contributes to natural human variation

H Heyn, S Moran, I Hernando-Herraez… - Genome …, 2013 - genome.cshlp.org
DNA methylation patterns are important for establishing cell, tissue, and organism
phenotypes, but little is known about their contribution to natural human variation. To …

DNA methylation landscapes: provocative insights from epigenomics

MM Suzuki, A Bird - Nature reviews genetics, 2008 - nature.com
The genomes of many animals, plants and fungi are tagged by methylation of DNA cytosine.
To understand the biological significance of this epigenetic mark it is essential to know …

Epigenetics and evolution

I Mendizabal, TE Keller, J Zeng… - … and comparative biology, 2014 - academic.oup.com
Epigenetic mechanisms traditionally have been studied in the domains of development and
disease, but they may also play important roles in ecological and evolutionary processes. In …

On the use of blood samples for measuring DNA methylation in ecological epigenetic studies

A Husby - Integrative and Comparative Biology, 2020 - academic.oup.com
There is increasing interest in understanding the potential for epigenetic factors to contribute
to phenotypic diversity in evolutionary biology. One well studied epigenetic mechanism is …

DNA methylation, epigenetics, and evolution in vertebrates: facts and challenges

A Varriale - International journal of evolutionary biology, 2014 - Wiley Online Library
DNA methylation is a key epigenetic modification in the vertebrate genomes known to be
involved in biological processes such as regulation of gene expression, DNA structure and …