Enhancers reside in a unique epigenetic environment during early zebrafish development

LJT Kaaij, M Mokry, M Zhou, M Musheev, G Geeven… - Genome biology, 2016 - Springer
Background Enhancers, not promoters, are the most dynamic in their DNA methylation
status throughout development and differentiation. Generally speaking, enhancers that are …

[HTML][HTML] Proper activity of histone H3 lysine 4 (H3K4) methyltransferase is required for morphogenesis during zebrafish cardiogenesis

JD Kim, E Kim, S Koun, HJ Ham, M Rhee, MJ Kim… - Molecules and cells, 2015 - Elsevier
While increasing evidence indicates the important function of histone methylation during
development, how this process influences cardiac development in vertebrates has not been …

Absence of global genomic cytosine methylation pattern erasure during medaka (Oryzias latipes) early embryo development

RB Walter, HY Li, GW Intano, S Kazianis… - … and Physiology Part B …, 2002 - Elsevier
Two techniques were used to analyze global genomic 5-methyl cytosine methylation at
CCGG sites of medaka embryo DNA. DNA was labeled by incorporation of microinjected …

Protein arginine methyltransferase 6 (Prmt6) is essential for early zebrafish development through the direct suppression of gadd45αa stress sensor gene

XX Zhao, YB Zhang, PL Ni, ZL Wu, YC Yan… - Journal of Biological …, 2016 - ASBMB
Histone lysine methylation is important in early zebrafish development; however, the role of
histone arginine methylation in this process remains unclear. H3R2me2a, generated by …

Broad shifts in gene expression during early postnatal life are associated with shifts in histone methylation patterns

JC Lui, W Chen, CSF Cheung, J Baron - PloS one, 2014 - journals.plos.org
During early postnatal life, extensive changes in gene expression occur concomitantly in
multiple major organs, indicating the existence of a common core developmental genetic …

Identification of chromatin states during zebrafish gastrulation using CUT & RUN and CUT &Tag

B Akdogan‐Ozdilek, KL Duval, FW Meng… - Developmental …, 2022 - Wiley Online Library
Background Cell fate decisions are governed by interactions between sequence‐specific
transcription factors and a dynamic chromatin landscape. Zebrafish offer a powerful system …

Cell‐Based Proteome Profiling Using an Affinity‐Based Probe (AfBP) Derived from 3‐Deazaneplanocin A (DzNep)

EKW Tam, Z Li, YL Goh, X Cheng… - Chemistry–An Asian …, 2013 - Wiley Online Library
Deazaneplanocin A (DzNep), a global histone methylation inhibitor, has attracted significant
interest in epigenetic research in recent years. The molecular mechanism of action and the …

Active DNA demethylation at enhancers during the vertebrate phylotypic period

O Bogdanović, AH Smits, E de la Calle Mustienes… - Nature …, 2016 - nature.com
The vertebrate body plan and organs are shaped during a conserved embryonic phase
called the phylotypic stage. However, the mechanisms that guide the epigenome through …

[PDF][PDF] Dynamics of 5-hydroxymethylcytosine and chromatin marks in Mammalian neurogenesis

MA Hahn, R Qiu, X Wu, AX Li, H Zhang, J Wang, J Jui… - Cell reports, 2013 - cell.com
DNA methylation in mammals is highly dynamic during germ cell and preimplantation
development but is relatively static during the development of somatic tissues. 5 …

Active DNA demethylation at enhancers during the vertebrate phylotypic period

O Bogdanovic, AH Smits, E de la Calle Mustienes… - Nature …, 2016 - go.gale.com
The vertebrate body plan and organs are shaped during a conserved embryonic phase
called the phylotypic stage. However, the mechanisms that guide the epigenome through …