Identification of chromatin states during zebrafish gastrulation using CUT & RUN and CUT &Tag

B Akdogan‐Ozdilek, KL Duval, FW Meng… - Developmental …, 2022 - Wiley Online Library
Background Cell fate decisions are governed by interactions between sequence‐specific
transcription factors and a dynamic chromatin landscape. Zebrafish offer a powerful system …

[HTML][HTML] Chromatin dynamics at the maternal to zygotic transition: recent advances from the zebrafish model

B Akdogan-Ozdilek, KL Duval, MG Goll - F1000Research, 2020 - ncbi.nlm.nih.gov
Early animal development is characterized by intense reorganization of the embryonic
genome, including large-scale changes in chromatin structure and in the DNA and histone …

Mapping the chromatin accessibility landscape of zebrafish embryogenesis at single-cell resolution by SPATAC-seq

K Sun, X Liu, R Xu, C Liu, A Meng, X Lan - Nature Cell Biology, 2024 - nature.com
Currently, the dynamic accessible elements that determine regulatory programs responsible
for the unique identity and function of each cell type during zebrafish embryogenesis lack …

Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos

AC McGarvey, W Kopp, D Vučićević, K Mattonet… - Cell Genomics, 2022 - cell.com
DNA accessibility of cis-regulatory elements (CREs) dictates transcriptional activity and
drives cell differentiation during development. While many genes regulating embryonic …

The chromatin accessibility dynamics during cell fate specifications in zebrafish early embryogenesis

Q Xu, Y Zhang, W Xu, D Liu, W Jin… - Nucleic Acids …, 2024 - academic.oup.com
Chromatin accessibility plays a critical role in the regulation of cell fate decisions. Although
gene expression changes have been extensively profiled at the single-cell level during early …

Chromatin modification in zebrafish development

JC Mas, ES Noël, EA Ober - Methods in Cell Biology, 2011 - Elsevier
The generation of complex organisms requires that an initial population of cells with
identical gene expression profiles can adopt different cell fates during development by …

Single-nucleus chromatin landscapes during zebrafish early embryogenesis

X Lin, X Yang, C Chen, W Ma, Y Wang, X Li, K Zhao… - Scientific Data, 2023 - nature.com
Vertebrate embryogenesis is a remarkable process, during which numerous cell types of
different lineages arise within a short time frame. An overwhelming challenge to understand …

Genome-wide snapshot of chromatin regulators and states in Xenopus embryos by ChIP-Seq

GE Gentsch, I Patrushev, JC Smith - JoVE (Journal of Visualized …, 2015 - jove.com
The recruitment of chromatin regulators and the assignment of chromatin states to specific
genomic loci are pivotal to cell fate decisions and tissue and organ formation during …

Chromatin architecture transitions from zebrafish sperm through early embryogenesis

CL Wike, Y Guo, M Tan, R Nakamura… - Genome …, 2021 - genome.cshlp.org
Chromatin architecture mapping in 3D formats has increased our understanding of how
regulatory sequences and gene expression are connected and regulated in a genome. The …

DNA methylation and histone modifications are essential for regulation of stem cell formation and differentiation in zebrafish development

AD Marchione, Z Thompson… - Briefings in functional …, 2021 - academic.oup.com
The complex processes necessary for embryogenesis require a gene regulatory network
that is complex and systematic. Gene expression regulates development and …