Identification of chromatin states during zebrafish gastrulation using CUT & RUN and CUT &Tag
Background Cell fate decisions are governed by interactions between sequence‐specific
transcription factors and a dynamic chromatin landscape. Zebrafish offer a powerful system …
transcription factors and a dynamic chromatin landscape. Zebrafish offer a powerful system …
[HTML][HTML] Chromatin dynamics at the maternal to zygotic transition: recent advances from the zebrafish model
Early animal development is characterized by intense reorganization of the embryonic
genome, including large-scale changes in chromatin structure and in the DNA and histone …
genome, including large-scale changes in chromatin structure and in the DNA and histone …
Mapping the chromatin accessibility landscape of zebrafish embryogenesis at single-cell resolution by SPATAC-seq
Currently, the dynamic accessible elements that determine regulatory programs responsible
for the unique identity and function of each cell type during zebrafish embryogenesis lack …
for the unique identity and function of each cell type during zebrafish embryogenesis lack …
Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos
AC McGarvey, W Kopp, D Vučićević, K Mattonet… - Cell Genomics, 2022 - cell.com
DNA accessibility of cis-regulatory elements (CREs) dictates transcriptional activity and
drives cell differentiation during development. While many genes regulating embryonic …
drives cell differentiation during development. While many genes regulating embryonic …
The chromatin accessibility dynamics during cell fate specifications in zebrafish early embryogenesis
Q Xu, Y Zhang, W Xu, D Liu, W Jin… - Nucleic Acids …, 2024 - academic.oup.com
Chromatin accessibility plays a critical role in the regulation of cell fate decisions. Although
gene expression changes have been extensively profiled at the single-cell level during early …
gene expression changes have been extensively profiled at the single-cell level during early …
Chromatin modification in zebrafish development
JC Mas, ES Noël, EA Ober - Methods in Cell Biology, 2011 - Elsevier
The generation of complex organisms requires that an initial population of cells with
identical gene expression profiles can adopt different cell fates during development by …
identical gene expression profiles can adopt different cell fates during development by …
Single-nucleus chromatin landscapes during zebrafish early embryogenesis
X Lin, X Yang, C Chen, W Ma, Y Wang, X Li, K Zhao… - Scientific Data, 2023 - nature.com
Vertebrate embryogenesis is a remarkable process, during which numerous cell types of
different lineages arise within a short time frame. An overwhelming challenge to understand …
different lineages arise within a short time frame. An overwhelming challenge to understand …
Genome-wide snapshot of chromatin regulators and states in Xenopus embryos by ChIP-Seq
GE Gentsch, I Patrushev, JC Smith - JoVE (Journal of Visualized …, 2015 - jove.com
The recruitment of chromatin regulators and the assignment of chromatin states to specific
genomic loci are pivotal to cell fate decisions and tissue and organ formation during …
genomic loci are pivotal to cell fate decisions and tissue and organ formation during …
Chromatin architecture transitions from zebrafish sperm through early embryogenesis
Chromatin architecture mapping in 3D formats has increased our understanding of how
regulatory sequences and gene expression are connected and regulated in a genome. The …
regulatory sequences and gene expression are connected and regulated in a genome. The …
DNA methylation and histone modifications are essential for regulation of stem cell formation and differentiation in zebrafish development
AD Marchione, Z Thompson… - Briefings in functional …, 2021 - academic.oup.com
The complex processes necessary for embryogenesis require a gene regulatory network
that is complex and systematic. Gene expression regulates development and …
that is complex and systematic. Gene expression regulates development and …