Cell type-specific DNA methylation patterns in the human breast

N Bloushtain-Qimron, J Yao… - Proceedings of the …, 2008 - National Acad Sciences
Cellular identity and differentiation are determined by epigenetic programs. The
characteristics of these programs in normal human mammary epithelium and their similarity …

Epigenetic patterns of embryonic and adult stem cells

N Bloushtain-Qimron, J Yao, M Shipitsin, R Maruyama… - Cell Cycle, 2009 - Taylor & Francis
Embryonic stem (ES) cells are pluripotent cells that differentiate into all cell types of the
organism. In adult, multipotent tissue-specific stem cells undergo multi-lineage differentiation …

Genome-wide analysis of aberrant methylation in human breast cancer cells using methyl-DNA immunoprecipitation combined with high-throughput sequencing

Y Ruike, Y Imanaka, F Sato, K Shimizu, G Tsujimoto - BMC genomics, 2010 - Springer
Background Cancer cells undergo massive alterations to their DNA methylation patterns that
result in aberrant gene expression and malignant phenotypes. However, the mechanisms …

Exploring DNA methylation changes in promoter, intragenic, and intergenic regions as early and late events in breast cancer formation

GH Rauscher, JK Kresovich, M Poulin, L Yan, V Macias… - BMC cancer, 2015 - Springer
Background Breast cancer formation is associated with frequent changes in DNA
methylation but the extent of very early alterations in DNA methylation and the biological …

Concordant epigenetic silencing of transforming growth factor-β signaling pathway genes occurs early in breast carcinogenesis

RA Hinshelwood, LI Huschtscha, J Melki, C Stirzaker… - Cancer research, 2007 - AACR
Human mammary epithelial cells (HMEC) grown under standard cell culture conditions enter
a growth phase referred to as selection, but a subpopulation is able to escape from arrest …

The dynamics and prognostic potential of DNA methylation changes at stem cell gene loci in women's cancer

J Zhuang, A Jones, SH Lee, E Ng, H Fiegl… - PLoS …, 2012 - journals.plos.org
Aberrant DNA methylation is an important cancer hallmark, yet the dynamics of DNA
methylation changes in human carcinogenesis remain largely unexplored. Moreover, the …

Determining the effect of DNA methylation on gene expression in cancer cells

CJ Lee, J Evans, K Kim, H Chae, S Kim - Gene Function Analysis, 2014 - Springer
DNA methylation, a DNA modification by adding methyl group to cytosine, has an important
role in the regulation of gene expression. DNA methylation is known to be associated with …

Integrated analysis of genome-wide DNA methylation and gene expression profiles in molecular subtypes of breast cancer

JK Rhee, K Kim, H Chae, J Evans, P Yan… - Nucleic acids …, 2013 - academic.oup.com
Aberrant DNA methylation of CpG islands, CpG island shores and first exons is known to
play a key role in the altered gene expression patterns in all human cancers. To date, a …

Epigenetic regulation of cell type–specific expression patterns in the human mammary epithelium

R Maruyama, S Choudhury, A Kowalczyk… - PLoS …, 2011 - journals.plos.org
Differentiation is an epigenetic program that involves the gradual loss of pluripotency and
acquisition of cell type–specific features. Understanding these processes requires genome …

Age-and pregnancy-associated DNA methylation changes in mammary epithelial cells

SJ Huh, K Clement, D Jee, A Merlini, S Choudhury… - Stem cell reports, 2015 - cell.com
Postnatal mammary gland development and differentiation occur during puberty and
pregnancy. To explore the role of DNA methylation in these processes, we determined the …