[HTML][HTML] WGDI: a user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes

P Sun, B Jiao, Y Yang, L Shan, T Li, X Li, Z Xi, X Wang… - Molecular plant, 2022 - cell.com
Evidence of whole-genome duplications (WGDs) and subsequent karyotype changes has
been detected in most major lineages of living organisms on Earth. To clarify the complex …

The evolutionary dynamics of plant duplicate genes

RC Moore, MD Purugganan - Current opinion in plant biology, 2005 - Elsevier
Given the prevalence of duplicate genes and genomes in plant species, the study of their
evolutionary dynamics has been a focus of study in plant evolutionary genetics over the past …

Organ and Cell Type–Specific Complementary Expression Patterns and Regulatory Neofunctionalization between Duplicated Genes in Arabidopsis thaliana

SL Liu, GJ Baute, KL Adams - Genome biology and evolution, 2011 - academic.oup.com
Duplicated genes can contribute to the evolution of new functions and they are common in
eukaryotic genomes. After duplication, genes can show divergence in their sequence and/or …

Evolution of gene duplication in plants

N Panchy, M Lehti-Shiu, SH Shiu - Plant physiology, 2016 - academic.oup.com
Ancient duplication events and a high rate of retention of extant pairs of duplicate genes
have contributed to an abundance of duplicate genes in plant genomes. These duplicates …

[HTML][HTML] The evolutionary conundrum of whole‐genome duplication

L Carretero‐Paulet, Y Van de Peer - American journal of botany, 2020 - ncbi.nlm.nih.gov
Whole-genome duplication (WGD) is a dramatic, common event in plants. Because of the
detrimental effects arising from doubling the entire chromosome set, such as minority …

[HTML][HTML] A role for gene duplication and natural variation of gene expression in the evolution of metabolism

DJ Kliebenstein - PloS one, 2008 - journals.plos.org
Background Most eukaryotic genomes have undergone whole genome duplications during
their evolutionary history. Recent studies have shown that the function of these duplicated …

Duplicate genes increase expression diversity in closely related species and allopolyploids

M Ha, ED Kim, ZJ Chen - Proceedings of the National …, 2009 - National Acad Sciences
Polyploidy or whole genome duplication (WGD) provides raw genetic materials for
sequence and expression evolution of duplicate genes. However, the mode and tempo of …

Evolution of cis-regulatory elements and regulatory networks in duplicated genes of Arabidopsis

AA Arsovski, J Pradinuk, XQ Guo, S Wang… - Plant …, 2015 - academic.oup.com
Plant genomes contain large numbers of duplicated genes that contribute to the evolution of
new functions. Following duplication, genes can exhibit divergence in their coding sequence …

[HTML][HTML] Different patterns of gene structure divergence following gene duplication in Arabidopsis

Y Wang, X Tan, AH Paterson - BMC genomics, 2013 - Springer
Background Divergence in gene structure following gene duplication is not well understood.
Gene duplication can occur via whole-genome duplication (WGD) and single-gene …

[HTML][HTML] Functional divergence between subgenomes and gene pairs after whole genome duplications

Z Liang, JC Schnable - Molecular plant, 2018 - cell.com
Gene loss following whole genome duplication (WGD) is often biased, with one subgenome
retaining more ancestral genes and the other sustaining more gene deletions. While bias …