Impact of whole‐genome duplication events on diversification rates in angiosperms

JB Landis, DE Soltis, Z Li, HE Marx… - American journal of …, 2018 - Wiley Online Library
Premise of the Study Polyploidy or whole‐genome duplication (WGD) pervades the
evolutionary history of angiosperms. Despite extensive progress in our understanding of …

Extensive sequence duplication in Arabidopsis revealed by pseudo-heterozygosity

B Jaegle, R Pisupati, LM Soto-Jiménez, R Burns… - Genome Biology, 2023 - Springer
Background It is apparent that genomes harbor much structural variation that is largely
undetected for technical reasons. Such variation can cause artifacts when short-read …

Analysis of Arabidopsis genome-wide variations before and after meiosis and meiotic recombination by resequencing Landsberg erecta and all four products of a …

P Lu, X Han, J Qi, J Yang, AJ Wijeratne, T Li… - Genome …, 2012 - genome.cshlp.org
Meiotic recombination, including crossovers (COs) and gene conversions (GCs), impacts
natural variation and is an important evolutionary force. COs increase genetic diversity by …

Chromosome-scale assembly and evolution of the tetraploid Salvia splendens (Lamiaceae) genome

KH Jia, H Liu, RG Zhang, J Xu, SS Zhou… - Horticulture …, 2021 - academic.oup.com
Polyploidization plays a key role in plant evolution, but the forces driving the fate of
homoeologs in polyploid genomes, ie, paralogs resulting from a whole-genome duplication …

Many gene and domain families have convergent fates following independent whole-genome duplication events in Arabidopsis, Oryza, Saccharomyces and …

AH Paterson, BA Chapman, JC Kissinger, JE Bowers… - Trends in genetics, 2006 - cell.com
Genome duplication is potentially a good source of new genes, but such genes take time to
evolve. We have found a group of 'duplication-resistant'genes, which have undergone …

Constraining the timing of whole genome duplication in plant evolutionary history

JW Clark, PCJ Donoghue - Proceedings of the Royal …, 2017 - royalsocietypublishing.org
Whole genome duplication (WGD) has occurred in many lineages within the tree of life and
is invariably invoked as causal to evolutionary innovation, increased diversity, and extinction …

Patterns and consequences of subgenome differentiation provide insights into the nature of paleopolyploidy in plants

M Zhao, B Zhang, D Lisch, J Ma - The Plant Cell, 2017 - academic.oup.com
Polyploidy is an important feature of plant genomes, but the nature of many polyploidization
events remains to be elucidated. Here, we demonstrate that the evolutionary fates of the …

Genome and gene duplications and gene expression divergence: a view from plants

Y Wang, X Wang, AH Paterson - … of the New York Academy of …, 2012 - Wiley Online Library
With many plant genomes sequenced, it is now clear that one distinguishing feature of
angiosperm (flowering plant) genomes is their high frequency of whole‐genome duplication …

Gene duplication as a driver of plant morphogenetic evolution

SA Rensing - Current opinion in plant biology, 2014 - Elsevier
Highlights•Whole genome duplications are an important mode of plant evolution.•Plants
evolve developmental novelties by retention of duplicated control genes.•Genes controlling …

Unbiased subgenome evolution following a recent whole-genome duplication in pear (Pyrus bretschneideri Rehd.)

Q Li, X Qiao, H Yin, Y Zhou, H Dong, K Qi… - Horticulture …, 2019 - academic.oup.com
Genome fractionation (also known as diploidization) frequently occurs following
paleopolyploidization events. Biased fractionation between subgenomes has been found in …