DNA methylation: insights into human evolution

I Hernando-Herraez, R Garcia-Perez, AJ Sharp… - PLoS …, 2015 - journals.plos.org
A fundamental initiative for evolutionary biologists is to understand the molecular basis
underlying phenotypic diversity. A long-standing hypothesis states that species-specific traits …

Single-cell DNA methylome and 3D multi-omic atlas of the adult mouse brain

H Liu, Q Zeng, J Zhou, A Bartlett, BA Wang, P Berube… - Nature, 2023 - nature.com
Cytosine DNA methylation is essential in brain development and is implicated in various
neurological disorders. Understanding DNA methylation diversity across the entire brain in a …

Epigenetics and evolution

I Mendizabal, TE Keller, J Zeng… - … and comparative biology, 2014 - academic.oup.com
Epigenetic mechanisms traditionally have been studied in the domains of development and
disease, but they may also play important roles in ecological and evolutionary processes. In …

A comparison of gene expression and DNA methylation patterns across tissues and species

LE Blake, J Roux, I Hernando-Herraez… - Genome …, 2020 - genome.cshlp.org
Previously published comparative functional genomic data sets from primates using frozen
tissue samples, including many data sets from our own group, were often collected and …

Epigenetics: differential DNA methylation in mammalian somatic tissues

H Nagase, S Ghosh - The FEBS journal, 2008 - Wiley Online Library
Epigenetics refers to heritable phenotypic alterations in the absence of DNA sequence
changes, and DNA methylation is one of the extensively studied epigenetic alterations. DNA …

DNA methylation atlas of the mouse brain at single-cell resolution

H Liu, J Zhou, W Tian, C Luo, A Bartlett, A Aldridge… - Nature, 2021 - nature.com
Mammalian brain cells show remarkable diversity in gene expression, anatomy and
function, yet the regulatory DNA landscape underlying this extensive heterogeneity is poorly …

Comparative epigenomic profiling of the DNA methylome in mouse and zebrafish uncovers high interspecies divergence

C Zhang, Y Hoshida, KC Sadler - Frontiers in Genetics, 2016 - frontiersin.org
The DNA methylation landscape is dynamically patterned during development and distinct
methylation patterns distinguish healthy from diseased cells. However, whether tissue …

Replication timing-related and gene body-specific methylation of active human genes

D Aran, G Toperoff, M Rosenberg… - Human molecular …, 2011 - academic.oup.com
Understanding how the epigenetic blueprint of the genome shapes human phenotypes
requires systematic evaluation of the complex interplay between gene activity and the …

Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis

O Bogdanović, SW Long, SJ van Heeringen… - Genome …, 2011 - genome.cshlp.org
DNA methylation is a tightly regulated epigenetic mark associated with transcriptional
repression. Next-generation sequencing of purified methylated DNA obtained from early …

Interindividual methylomic variation across blood, cortex, and cerebellum: implications for epigenetic studies of neurological and neuropsychiatric phenotypes

E Hannon, K Lunnon, L Schalkwyk, J Mill - Epigenetics, 2015 - Taylor & Francis
Given the tissue-specific nature of epigenetic processes, the assessment of disease-relevant
tissue is an important consideration for epigenome-wide association studies (EWAS). Little …