DNA methylation profile of tissue-dependent and differentially methylated regions (T-DMRs) in mouse promoter regions demonstrating tissue-specific gene expression

S Yagi, K Hirabayashi, S Sato, W Li… - Genome …, 2008 - genome.cshlp.org
DNA methylation constitutes an important epigenetic regulation mechanism in many
eukaryotes, although the extent of DNA methylation in the regulation of gene expression in …

Diverse and dynamic DNA modifications in brain and diseases

MJ Armstrong, Y Jin, EG Allen… - Human molecular …, 2019 - academic.oup.com
DNA methylation is a class of epigenetic modification essential for coordinating gene
expression timing and magnitude throughout normal brain development and for proper brain …

Longitudinal genome-wide DNA methylation analysis uncovers persistent early-life DNA methylation changes

RF Pérez, P Santamarina, JR Tejedor… - Journal of translational …, 2019 - Springer
Background Early life is a period of drastic epigenetic remodeling in which the epigenome is
especially sensitive to extrinsic and intrinsic influence. However, the epigenome-wide …

Genetic impacts on DNA methylation: research findings and future perspectives

S Villicaña, JT Bell - Genome biology, 2021 - Springer
Multiple recent studies highlight that genetic variants can have strong impacts on a
significant proportion of the human DNA methylome. Methylation quantitative trait loci, or …

The human blood DNA methylome displays a highly distinctive profile compared with other somatic tissues

R Lowe, G Slodkowicz, N Goldman, VK Rakyan - Epigenetics, 2015 - Taylor & Francis
In mammals, DNA methylation profiles vary substantially between tissues. Recent genome-
scale studies report that blood displays a highly distinctive methylomic profile from other …

Dynamics and context-dependent roles of DNA methylation

C Ambrosi, M Manzo, T Baubec - Journal of molecular biology, 2017 - Elsevier
DNA methylation is one of the most extensively studied epigenetic marks. It is involved in
transcriptional gene silencing and plays important roles during mammalian development. Its …

Parent of origin genetic effects on methylation in humans are common and influence complex trait variation

Y Zeng, C Amador, C Xia, R Marioni, D Sproul… - Nature …, 2019 - nature.com
Parent-of-origin effects (POE) exist when there is differential expression of alleles inherited
from the two parents. A genome-wide scan for POE on DNA methylation at 639,238 CpGs in …

Natural variation in DNA methylation homeostasis and the emergence of epialleles

Y Zhang, JM Wendte, L Ji… - Proceedings of the …, 2020 - National Acad Sciences
In plants and mammals, DNA methylation plays a critical role in transcriptional silencing by
delineating heterochromatin from transcriptionally active euchromatin. A homeostatic …

Functional variation in allelic methylomes underscores a strong genetic contribution and reveals novel epigenetic alterations in the human epigenome

WA Cheung, X Shao, A Morin, V Siroux, T Kwan, B Ge… - Genome biology, 2017 - Springer
Background The functional impact of genetic variation has been extensively surveyed,
revealing that genetic changes correlated to phenotypes lie mostly in non-coding genomic …

Parent-of-origin DNA methylation dynamics during mouse development

Y Stelzer, H Wu, Y Song, CS Shivalila, S Markoulaki… - Cell reports, 2016 - cell.com
Parent-specific differentially methylated regions (DMRs) are established during
gametogenesis and regulate parent-specific expression of imprinted genes. Monoallelic …