BayesCCE: a Bayesian framework for estimating cell-type composition from DNA methylation without the need for methylation reference

E Rahmani, R Schweiger, L Shenhav, T Wingert… - Genome biology, 2018 - Springer
We introduce a Bayesian semi-supervised method for estimating cell counts from DNA
methylation by leveraging an easily obtainable prior knowledge on the cell-type composition …

DNA methylation and cell-type distribution

EA Houseman - Computational and Statistical Epigenomics, 2015 - Springer
Epigenetic processes form the principal mechanisms by which cell differentiation occurs.
Consequently, DNA methylation measurements are strongly influenced by the DNA …

Simultaneous profiling of transcriptome and DNA methylome from a single cell

Y Hu, K Huang, Q An, G Du, G Hu, J Xue, X Zhu… - Genome biology, 2016 - Springer
Background Single-cell transcriptome and single-cell methylome technologies have become
powerful tools to study RNA and DNA methylation profiles of single cells at a genome-wide …

Strategies for detecting genomic DNA methylation: a survey of US patents

M Ahmad Chaudhry - Recent Patents on DNA & Gene …, 2010 - ingentaconnect.com
DNA methylation is one of the mechanisms for the epigenetic control of gene expression.
Alterations in the methylation status of genomic DNA can result in the silencing of genes …

DNA methylation and gene expression differences in children conceived in vitro or in vivo

S Katari, N Turan, M Bibikova, O Erinle… - Human molecular …, 2009 - academic.oup.com
Epidemiological data indicate that children conceived in vitro have a greater relative risk of
low birth-weight, major and minor birth defects, and rare disorders involving imprinted …

[图书][B] DNA methylation

J Tost - 2009 - Springer
Epigenetics can be defined as the study of heritable changes in gene expression without
alteration of the DNA sequence itself. This means that epigenetic variants are stable …

Variability of genome-wide DNA methylation and mRNA expression profiles in reproductive and endocrine disease related tissues

N Rahmioglu, AW Drong, H Lockstone, T Tapmeier… - Epigenetics, 2017 - Taylor & Francis
Genome-wide association studies in the fields of reproductive medicine and endocrinology
are yielding robust genetic variants associated with disease. Integrated genomic …

DNA methylomes of bovine gametes and in vivo produced preimplantation embryos

Z Jiang, J Lin, H Dong, X Zheng, SL Marjani… - Biology of …, 2018 - academic.oup.com
DNA methylation is an important epigenetic modification that undergoes dynamic changes
in mammalian embryogenesis, during which both parental genomes are reprogrammed …

Sex chromosomes and sex phenotype contribute to biased DNA methylation in mouse liver

QKW Zhuang, JH Galvez, Q Xiao, N AlOgayil… - Cells, 2020 - mdpi.com
Sex biases in the genome-wide distribution of DNA methylation and gene expression levels
are some of the manifestations of sexual dimorphism in mammals. To advance our …

Comparison of global DNA methylation patterns in human melanoma tissues and their derivative cell lines

EJ Rodger, SN Almomani, JL Ludgate, PA Stockwell… - Cancers, 2021 - mdpi.com
Simple Summary Cancer cell lines are a defined population of cells, originally sourced from
tumour tissue, that can be maintained in culture for an extended period of time. They are a …