[HTML][HTML] Tissue-specific variation in DNA methylation levels along human chromosome 1

C De Bustos, E Ramos, JM Young, RK Tran… - Epigenetics & …, 2009 - Springer
Background DNA methylation is a major epigenetic modification important for regulating
gene expression and suppressing spurious transcription. Most methods to scan the genome …

Comprehensive analysis of DNA-methylation in mammalian tissues using MeDIP-chip

N Pälmke, D Santacruz, J Walter - Methods, 2011 - Elsevier
Genome-wide mapping of epigenetic changes is essential for understanding the
mechanisms involved in gene regulation during cell differentiation and embryonic …

[HTML][HTML] DMRforPairs: identifying differentially methylated regions between unique samples using array based methylation profiles

MA Rijlaarsdam, YG van der Zwan, LCJ Dorssers… - BMC …, 2014 - Springer
Background Array based methylation profiling is a cost-effective solution to study the
association between genome methylation and human disease & development. Available …

Promoter methylation pattern of caspase-8, P16INK4A, MGMT, TIMP-3, and E-cadherin in medulloblastoma

M Ebinger, L Senf, O Wachowski… - Pathology & Oncology …, 2004 - Springer
Methylation of promoter regions of CpG-rich sites is an important mechanism for silencing of
tumor suppressor genes (TSG). To evaluate the role of tumor suppressor genes caspase-8 …

[HTML][HTML] Methyl-CpG-binding domain sequencing reveals a prognostic methylation signature in neuroblastoma

A Decock, M Ongenaert, R Cannoodt, K Verniers… - Oncotarget, 2016 - ncbi.nlm.nih.gov
Accurate assessment of neuroblastoma outcome prediction remains challenging. Therefore,
this study aims at establishing novel prognostic tumor DNA methylation biomarkers. In total …

Validation of a DNA methylation microarray for 450,000 CpG sites in the human genome

J Sandoval, H Heyn, S Moran, J Serra-Musach… - Epigenetics, 2011 - Taylor & Francis
DNA methylation is the most studied epigenetic mark and CpG methylation is central to
many biological processes and human diseases. Since cancer has highlighted the …

Differential methylation hybridization: profiling DNA methylation with a high-density CpG island microarray

PS Yan, D Potter, DE Deatherage, THM Huang… - … : Methods and Protocols, 2009 - Springer
Differential methylation hybridization (DMH) is a high-throughput DNA methylation
screening tool that utilizes methylation-sensitive restriction enzymes to profile methylated …

[HTML][HTML] DNA methylation analysis of paediatric low-grade astrocytomas identifies a tumour-specific hypomethylation signature in pilocytic astrocytomas

JN Jeyapalan, GT Doctor, TA Jones… - Acta neuropathologica …, 2016 - Springer
Low-grade gliomas (LGGs) account for about a third of all brain tumours in children. We
conducted a detailed study of DNA methylation and gene expression to improve our …

High-throughput methylation profiling by MCA coupled to CpG island microarray

MRH Estécio, PS Yan, AEK Ibrahim, CS Tellez… - Genome …, 2007 - genome.cshlp.org
An abnormal pattern of DNA methylation occurs at specific genes in almost all neoplasms.
The lack of high-throughput methods with high specificity and sensitivity to detect changes in …

[HTML][HTML] DNA methylation analysis of chromosome 21 gene promoters at single base pair and single allele resolution

Y Zhang, C Rohde, S Tierling, TP Jurkowski… - PLoS …, 2009 - journals.plos.org
Differential DNA methylation is an essential epigenetic signal for gene regulation,
development, and disease processes. We mapped DNA methylation patterns of 190 gene …