MethyLight: a high-throughput assay to measure DNA methylation

CA Eads, KD Danenberg, K Kawakami… - Nucleic acids …, 2000 - academic.oup.com
Cytosine-5 DNA methylation occurs in the context of CpG dinucleotides in vertebrates.
Aberrant methylation of CpG islands in human tumors has been shown to cause …

A novel real-time PCR assay for quantitative analysis of methylated alleles (QAMA): analysis of the retinoblastoma locus

M Zeschnigk, S Böhringer, EA Price… - Nucleic acids …, 2004 - academic.oup.com
Altered methylation patterns have been found to play a role in developmental disorders,
cancer and aging. Increasingly, changes in DNA methylation are used as molecular markers …

Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications

RA Harris, T Wang, C Coarfa, RP Nagarajan… - Nature …, 2010 - nature.com
Abstract Analysis of DNA methylation patterns relies increasingly on sequencing-based
profiling methods. The four most frequently used sequencing-based technologies are the …

[HTML][HTML] Statistical methods for detecting differentially methylated loci and regions

MD Robinson, A Kahraman, CW Law, H Lindsay… - Frontiers in …, 2014 - frontiersin.org
DNA methylation, the reversible addition of methyl groups at CpG dinucleotides, represents
an important regulatory layer associated with gene expression. Changed methylation status …

Transitioning from genotypes to epigenotypes: why the time has come for medulloblastoma epigenomics

NV Batora, D Sturm, DTW Jones, M Kool, SM Pfister… - Neuroscience, 2014 - Elsevier
Recent advances in genomic technologies have allowed for tremendous progress in our
understanding of the biology underlying medulloblastoma, a malignant childhood brain …

MMASS: an optimized array-based method for assessing CpG island methylation

AEK Ibrahim, NP Thorne, K Baird… - Nucleic acids …, 2006 - academic.oup.com
We describe an optimized microarray method for identifying genome-wide CpG island
methylation called microarray-based methylation assessment of single samples (MMASS) …

Tumour class prediction and discovery by microarray-based DNA methylation analysis

P Adorján, J Distler, E Lipscher, F Model… - Nucleic acids …, 2002 - academic.oup.com
Aberrant DNA methylation of CpG sites is among the earliest and most frequent alterations
in cancer. Several studies suggest that aberrant methylation occurs in a tumour type-specific …

[HTML][HTML] Methylation Linear Discriminant Analysis (MLDA) for identifying differentially methylated CpG islands

W Dai, JM Teodoridis, J Graham, C Zeller… - BMC …, 2008 - Springer
Abstract Background Hypermethylation of promoter CpG islands is strongly correlated to
transcriptional gene silencing and epigenetic maintenance of the silenced state. As well as …

DNA methyltransferase-mediated transcriptional silencing in malignant glioma: a combined whole-genome microarray and promoter array analysis

G Foltz, JG Yoon, H Lee, TC Ryken, Z Sibenaller… - Oncogene, 2009 - nature.com
Epigenetic inactivation of tumor suppressor genes is a common feature in human cancer.
Promoter hypermethylation and histone deacetylation are reversible epigenetic mechanisms …

Genome-scale DNA methylation maps of pluripotent and differentiated cells

A Meissner, TS Mikkelsen, H Gu, M Wernig, J Hanna… - Nature, 2008 - nature.com
DNA methylation is essential for normal development,, and has been implicated in many
pathologies including cancer,. Our knowledge about the genome-wide distribution of DNA …