CpG island methylation in human lymphocytes is highly correlated with DNA sequence, repeats, and predicted DNA structure

C Bock, M Paulsen, S Tierling, T Mikeska… - PLoS …, 2006 - journals.plos.org
… While a genome-wide picture of DNA methylation patterns is … DNA methylation and other
genomic attributes such as DNAconservation. The authors fill this gap by reporting on a …

Protection of CpG islands from DNA methylation is DNA-encoded and evolutionarily conserved

HK Long, HW King, RK Patient, DT Odom… - Nucleic Acids …, 2016 - academic.oup.com
… -restricted repeat sequences that evaded DNA methylation in the … methylation to these
sequences, and species specific DNA binding events that protected against DNA methylation in …

Natural history of eukaryotic DNA methylation systems

LM Iyer, S Abhiman, L Aravind - Progress in molecular biology and …, 2011 - Elsevier
… date none of the enzymes involved in these DNA methylation events have been identified.
Making use of the currently available genome sequences from several of these organisms, we …

Dnmt2-dependent methylomes lack defined DNA methylation patterns

G Raddatz, PM Guzzardo, N Olova… - Proceedings of the …, 2013 - National Acad Sciences
conservation to the catalytic motifs of established DNA methyltransferases (5–7). … DNA
methylation in Dnmt2-only systems we also used bisulfite sequencing to analyze DNA methylation

Deciphering a methylome: what can we read into patterns of DNA methylation?

KB Flores, GV Amdam - Journal of Experimental Biology, 2011 - journals.biologists.com
sequencing, which can assess whether DNA methylation acts … a higher cross-species
conservation in methylated A. mellifera … that can contribute to this conservation. First, maintaining …

Genome-wide mapping reveals conservation of promoter DNA methylation following chicken domestication

Q Li, Y Wang, X Hu, Y Zhao, N Li - Scientific Reports, 2015 - nature.com
DNA sequence and gene expression programs were prevalent, we found that the inter-strain
DNA methylation … Our results reveal a surprising conservation of DNA methylation between …

A comparative analysis of DNA methylation across human embryonic stem cell lines

PY Chen, S Feng, JWJ Joo, SE Jacobsen, M Pellegrini - Genome biology, 2011 - Springer
… However, less is known about the conservation and variability of DNA methylation across …
of the canonical acceptor sequences), we observe high levels of methylation (Figure 2; Figure …

DeepCpG: accurate prediction of single-cell DNA methylation states using deep learning

C Angermueller, HJ Lee, W Reik, O Stegle - Genome biology, 2017 - Springer
… Globally, we observed a negative correlation between mutational effects and DNA sequence
conservation (P < 1.0 × 10 −15 ; Additional file 1: Figure S13), providing evidence that …

DNA methylation landscapes: provocative insights from epigenomics

MM Suzuki, A Bird - Nature reviews genetics, 2008 - nature.com
DNA methylation at repeated sequences, provides the link between transcription and de
novo … patterns between cell types within one individual contrasts with the conservation seen …

DNA methylation profiling of human chromosomes 6, 20 and 22

F Eckhardt, J Lewin, R Cortese, VK Rakyan, J Attwood… - Nature …, 2006 - nature.com
… Using bisulfite DNA sequencing, we report high-resolution methylation … The conservation of
DNA sequences between species is … conservation of DNA methylation. To determine whether …