Genomic patterns and context specific interpretation of DNA methylation

T Baubec, D Schübeler - Current opinion in genetics & development, 2014 - Elsevier
… in shaping methylation patterns. This tightly links DNA methylation with underlying DNA
sequence … DNMT3A/3B are also thought to be involved in maintaining DNA methylation patterns

Tools and strategies for analysis of genome-wide and gene-specific DNA methylation patterns

A Chatterjee, EJ Rodger, IM Morison… - Oral Biology: Molecular …, 2017 - Springer
… Accurate measurements of normal and altered DNA methylation patterns are … DNA
methylation. The availability of next-generation sequencing has enabled the profiling of methylation

Cell type-specific DNA methylation patterns in the human breast

N Bloushtain-Qimron, J Yao… - Proceedings of the …, 2008 - National Acad Sciences
… , we analyzed the DNA methylation and gene expression … by using MSDK (methylation-specific
digital karyotyping) and … -specific DNA methylation and gene expression patterns that …

Rethinking how DNA methylation patterns are maintained

PA Jones, G Liang - Nature Reviews Genetics, 2009 - nature.com
methylated, and DNA methylation patterns are tissue specific… The mechanisms by which
DNA methylation patterns could be … in those papers were: that DNA methylation can alter gene …

[HTML][HTML] DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns

K Lokk, V Modhukur, B Rajashekar, K Märtens, R Mägi… - Genome biology, 2014 - Springer
… We also found that the DNA methylation pattern of a single gene varies between gene
regions; for example, compared to the gene body, the TSS1500, TSS200, 5’-UTR, and first exon …

DNA methylation patterns formation and function

A Razin, M Szyf - Biochimica et Biophysica Acta (BBA)-Gene Structure …, 1984 - Elsevier
… gests the association of DNA methylation with gene activity [… -specific methylation patterns
during development must be elucidated. In this article the basic features of methylation patterns

Analysis of gene-specific DNA methylation patterns by Pyrosequencing® technology

J Tost, IG Gut - Pyrosequencing® Protocols, 2007 - Springer
Methylation patterns may be cell-type and/or tissue-specific and change slowly with age
and in response to environmental effects such as diet. Cytosine methylation is essential for …

Programming of DNA methylation patterns

H Cedar, Y Bergman - Annual review of biochemistry, 2012 - annualreviews.org
… Other alterations of the basic bimodal methylation pattern occur in a cell-type-specific
manner. Many genes that are silenced throughout the organism and expressed specifically in a …

[HTML][HTML] Cell-specific DNA methylation patterns of retina-specific genes

SL Merbs, MA Khan, L Hackler Jr, VF Oliver, J Wan… - PloS one, 2012 - journals.plos.org
… vertebrate photoreceptor-specific and retinal-expressed miRNA genes demonstrate both
cell-specific and site-specific DNA methylation patterns. Although the exact patterns differ in …

Quantitative high-throughput analysis of DNA methylation patterns by base-specific cleavage and mass spectrometry

M Ehrich, MR Nelson, P Stanssens… - Proceedings of the …, 2005 - National Acad Sciences
… for DNA methylation analysis that employs base-specific cleavage and MALDI-TOF MS
analysis to overcome those limitations. Using a combination of four base-specific cleavage …