Genomic patterns of DNA methylation: targets and function of an epigenetic mark

M Weber, D Schübeler - Current opinion in cell biology, 2007 - Elsevier
… for de novo methylation, as they are able to target unmethylated CpG sites [5]. They also
cooperate with DNMT1 to propagate methylation patterns during cell division [6]. DNMT2 has …

Functional genomics to new drug targets

R Kramer, D Cohen - Nature Reviews Drug Discovery, 2004 - nature.com
… The role of functional genomics in modern drug discovery is to prioritize these targets and to
… Here, we describe the field of functional genomics and review approaches that have been …

New tools for functional genomic analysis

X Chen, E Jorgenson, ST Cheung - Drug discovery today, 2009 - Elsevier
… The target cDNA is first labeled using fluorescent dyes and then hybridized to the array surface.
The retained labeled target … Human tumor samples frequently show abnormal patterns of …

Patterns of diverse gene functions in genomic neighborhoods predict gene function and phenotype

M Mihelčić, T Šmuc, F Supek - Scientific reports, 2019 - nature.com
… in genomes of individuals. Our work highlights a widespread pattern in how gene function is
… , respectively (the “/Par” denotes that parent GO terms of the target functions were removed). …

Genomic targets of nuclear estrogen receptors

R O'Lone, MC Frith, EK Karlsson… - Molecular …, 2004 - academic.oup.com
… in mammalian target genes. Of note, around one third of known human target genes … for
formulating hypotheses regarding the overall genomic expression pattern. Surprisingly, limited …

Analysis of kinase gene expression patterns across 5681 human tissue samples reveals functional genomic taxonomy of the kinome

S Kilpinen, K Ojala, O Kallioniemi - PloS one, 2010 - journals.plos.org
… Kinases play key roles in cell signaling and represent major targets for drug development, …
genes were transcriptionally active led to a functional genomic taxonomy of the kinome and a …

Functional genomics identifies therapeutic targets for MYC-driven cancer

M Toyoshima, HL Howie, M Imakura… - Proceedings of the …, 2012 - National Acad Sciences
… , indicating potential broad therapeutic implications of targeting CSNK1e function. In summary,
through a functional genomics approach, pathways essential in the context of oncogenic …

Regulation and function of mammalian DNA methylation patterns: a genomic perspective

H Wu, J Tao, YE Sun - Briefings in Functional Genomics, 2012 - academic.oup.com
… mediated epigenetic regulation to understand how they dynamically target genes within
the genome during stem cell differentiation and neuronal activity-dependent cellular events. …

Transcriptional features of genomic regulatory blocks

A Akalin, D Fredman, E Arner, X Dong, JC Bryne… - Genome biology, 2009 - Springer
… the target gene by virtue of being intertwined with the target gene's … gene after whole-genome
duplication and subsequent … The functions and expression patterns of bystander genes …

Genomic patterns and context specific interpretation of DNA methylation

T Baubec, D Schübeler - Current opinion in genetics & development, 2014 - Elsevier
genomic DNA methylation maps during cellular differentiation at unprecedented resolution.
Combined with functional … an important role in shaping methylation patterns. This tightly links …