… Dynamic organisation of 3D genome structure during early zebrafish development. The
schematic shows changes in chromatin organisation as zebrafish development progresses. (I) …

… of 3D genome organisation in the early embryo, and discuss … The first study of the 3D
genome at ZGA in zebrafish (Danio … in post-ZGA zebrafish embryos and become stronger and …

… Our methodology for image processing of threedimensional … have developed a
general three-dimensional reference system for the developing zebrafish embryo, the three-dimensional …

… egg (a model system in vertebrate development). The method is tested on several different
… forms of gene expression patterns. Fully 3D datasets for developmental gene expression are …

… To further analyze the global spatial structure of gene expression in the zebrafish embryo,
we computed a t-SNE map (“t-distributed stochastic neighbor embedding”) for all genes that …

… super-enhancers in the 3D genome. Our results provide insight into vertebrate genome
organization and demonstrate that the developing zebrafish embryo is a powerful model system …

… from zebrafish developmental biology research. We describe a range of … zebrafish
embryo development and made it available through internet. This atlas is based on threedimensional …

… genome organization in mammalian genomes. We start with an introduction of the major
tools used to map 3D genome … We then focus on dynamics of 3D genome organization during …

… of the zebrafish developing brain is also being developed … This atlas relies on the optical
clarity of the zebrafish embryo, … neuroanatomical structures within the developing brain. It uses …

… of zebrafish 3′ UTRs provide a resource for studying gene regulation during vertebrate
development. … In order to map the poly(A) landscape in the zebrafish genome, we obtained …