[HTML][HTML] Toward a mechanistic understanding of DNA methylation readout by transcription factors

JF Kribelbauer, XJ Lu, R Rohs, RS Mann… - Journal of molecular …, 2020 - Elsevier
… , aberrant DNA methylation patterns play a … DNA methylation is transitioning between,
rather than maintaining cellular states. This line of thinking raises the question how methylation

Rethinking how DNA methylation patterns are maintained

PA Jones, G Liang - Nature Reviews Genetics, 2009 - nature.com
… can alter gene expression profiles by influencing the binding affinities of transcription factors
or other proteins to DNA; that patterns of DNA methylation exist; and that these patterns vary …

DNA methylation profiling of transcription factor genes in normal lymphocyte development and lymphomas

C Ivascu, R Wasserkort, R Lesche, J Dong… - The international journal …, 2007 - Elsevier
… 3a), we observed an inverse methylation pattern with both T-cell cell lines being hypermethylated
(>90 percent, data not shown). However, for a number of genes such as c-maf, TCF7, …

Function and information content of DNA methylation

D Schübeler - Nature, 2015 - nature.com
… of transcriptional states 10,11 . This potential for inheritance coupled with the fact that DNA
methylation patterns … that other transcription factors are more sensitive to DNA methylation, in …

CpG methylation recruits sequence specific transcription factors essential for tissue specific gene expression

R Chatterjee, C Vinson - Biochimica et Biophysica Acta (BBA)-Gene …, 2012 - Elsevier
… Here we summarize the present understanding of DNA methylation in normal cells and …
Thus, determination of aberrant DNA methylation pattern could be used as an epigenetic …

Disclosing the crosstalk among DNA methylation, transcription factors, and histone marks in human pluripotent cells through discovery of DNA methylation motifs

PL Luu, HR Schöler, MJ Araúzo-Bravo - Genome Research, 2013 - genome.cshlp.org
… However, few studies have attempted to predict DNA methylation patterns. DNA methylation
occurs at C 5 cytosine positions, mainly in CpG loci. Some research has focused on CpG …

DNA methylation: old dog, new tricks?

CG Spruijt, M Vermeulen - Nature structural & molecular biology, 2014 - nature.com
… faithful transfer of DNA methylation patterns during cell … transcription factors. Elife 2,
e00726 (2013). This paper reveals that a large number of transcription factors interact with DNA

DNA methylation patterns formation and function

A Razin, M Szyf - Biochimica et Biophysica Acta (BBA)-Gene Structure …, 1984 - Elsevier
… suggests the association of DNA methylation with gene activity [11-… methylation patterns
during development must be elucidated. In this article the basic features of methylation patterns, …

Competition between DNA methylation and transcription factors determines binding of NRF1

S Domcke, AF Bardet, P Adrian Ginno, D Hartl… - Nature, 2015 - nature.com
… To test if cell-type-specific methylation patterns could similarly explain differential binding
of NRF1, we differentiated ES cells into neuronal progenitors and investigated NRF1 binding. …

Genome-wide DNA methylation patterns in CD4+ T cells from patients with systemic lupus erythematosus

M Jeffries, M Dozmorov, Y Tang, JT Merrill, JD Wren… - Epigenetics, 2011 - Taylor & Francis
… in DNA methylation patterns, we first had to examine the degree of variability in methylation
… We observed differential methylation in a number of transcription factors in lupus CD4 + T …