Whole-genome DNA methylation profiling using MethylCap-seq

AB Brinkman, F Simmer, K Ma, A Kaan, J Zhu… - Methods, 2010 - Elsevier
methylated [1], [2]. This widespread nature poses a challenge for whole-genome profiling of
the DNA methylation … used to reveal whole-genome DNA methylation landscapes in human …

Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling

R Pidsley, E Zotenko, TJ Peters, MG Lawrence… - Genome biology, 2016 - Springer
… Finally, we compared EPIC DNA methylation values with matched whole genome bisulphite
… the gold-standard technique for measuring DNA methylation. Again we found a high …

[HTML][HTML] Whole genome DNA methylation: beyond genes silencing

R Tirado-Magallanes, K Rebbani, R Lim, S Pradhan… - Oncotarget, 2017 - ncbi.nlm.nih.gov
DNA methylation analysis protocols such as whole genome … more sophisticated role of DNA
methylation, with gene silencing … , gene expression and DNA methylation profiles in a single …

Profiling genome-wide DNA methylation

WS Yong, FM Hsu, PY Chen - Epigenetics & chromatin, 2016 - Springer
methylation profile for a whole genome or targeted regions [82]. The relatively low levels
of 5hmC and the subtraction step demand an increase in the sequencing coverage and the …

Comparative whole genome DNA methylation profiling across cattle tissues reveals global and tissue-specific methylation patterns

Y Zhou, S Liu, Y Hu, L Fang, Y Gao, H Xia… - BMC biology, 2020 - Springer
… Using Holstein cattle, we generated 29 whole genome bisulfite sequencing (WGBS) … ,
and 2 whole genome sequencing datasets. We did read mapping and DNA methylation calling …

Genome‐wide DNA methylation profiling

M Bibikova, JB Fan - Wiley Interdisciplinary Reviews: Systems …, 2010 - Wiley Online Library
… While methods described above are effective and can provide information about
methylation states across the whole genome, these platforms require large amounts of …

Whole genome DNA methylation analysis based on high throughput sequencing technology

N Li, M Ye, Y Li, Z Yan, LM Butcher, J Sun, X Han… - Methods, 2010 - Elsevier
… There are numerous approaches to decipher a whole genome DNA methylation profile (“…
methods, whole genome bisulfite-sequencing (BS-seq), involves treatment of DNA with sodium …

Comparison of whole-genome DNA methylation patterns in whole blood, saliva, and lymphoblastoid cell lines

TM Thompson, D Sharfi, M Lee, CM Yrigollen… - Behavior genetics, 2013 - Springer
… Here, we present the results of a comparison between whole genome methylation profiles
of WB, LCLs, and SL samples derived from the same individuals. The aims of this study were …

Whole-Genome DNA Methylation Profile of the Jewel Wasp (Nasonia vitripennis)

SM Beeler, GT Wong, JM Zheng… - … : Genes, Genomes …, 2014 - academic.oup.com
… Here, we present the whole-genome DNA methylation profile of Nasonia vitripennis. Our
goal was to provide an additional methylome to those already available from insects, so that the …

[HTML][HTML] Whole-genome DNA methylation profiling identifies epigenetic signatures of uterine carcinosarcoma

J Li, X Xing, D Li, B Zhang, DG Mutch, IS Hagemann… - Neoplasia, 2017 - Elsevier
… We have analyzed the epigenetic profile of UCS components in comparison with nontumor
… In conclusion, in this study, we have used next-generation DNA methylation profiling to …