Whole-genome DNA methylation profiling using MethylCap-seq

AB Brinkman, F Simmer, K Ma, A Kaan, J Zhu… - Methods, 2010 - Elsevier
methylated [1], [2]. This widespread nature poses a challenge for whole-genome profiling of
the DNA methylation … used to reveal whole-genome DNA methylation landscapes in human …

[HTML][HTML] Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling

R Pidsley, E Zotenko, TJ Peters, MG Lawrence… - Genome biology, 2016 - Springer
… Finally, we compared EPIC DNA methylation values with matched whole genome bisulphite
… the gold-standard technique for measuring DNA methylation. Again we found a high …

Genome‐wide DNA methylation profiling

M Bibikova, JB Fan - Wiley Interdisciplinary Reviews: Systems …, 2010 - Wiley Online Library
… While methods described above are effective and can provide information about
methylation states across the whole genome, these platforms require large amounts of …

[HTML][HTML] Profiling genome-wide DNA methylation

WS Yong, FM Hsu, PY Chen - Epigenetics & chromatin, 2016 - Springer
methylation profile for a whole genome or targeted regions [82]. The relatively low levels
of 5hmC and the subtraction step demand an increase in the sequencing coverage and the …

[HTML][HTML] Comparative whole genome DNA methylation profiling across cattle tissues reveals global and tissue-specific methylation patterns

Y Zhou, S Liu, Y Hu, L Fang, Y Gao, H Xia… - BMC biology, 2020 - Springer
Full size image We compared the methylation profiles between pairs of samples at a global
CpG level. As expected, the correlations between samples within the same tissue type or …

[HTML][HTML] Whole genome DNA methylation: beyond genes silencing

R Tirado-Magallanes, K Rebbani, R Lim, S Pradhan… - Oncotarget, 2017 - ncbi.nlm.nih.gov
… For instance, by combining single cell genotyping, gene expression and DNA methylation
profiles in a single assay, a research group was able to identify the DNA methylation changes …

Whole-Genome DNA Methylation Profile of the Jewel Wasp (Nasonia vitripennis)

SM Beeler, GT Wong, JM Zheng… - … : Genes, Genomes …, 2014 - academic.oup.com
… Here, we present the whole-genome DNA methylation profile of Nasonia vitripennis. Our
goal was to provide an additional methylome to those already available from insects, so that the …

Genome-Wide Dna Methylation Profiling Using Infinium® Assay

M Bibikova, J Le, B Barnes, S Saedinia-Melnyk… - …, 2009 - Taylor & Francis
… As an alternative, bisulfite shotgun sequencing of the entire genome would eliminate this
bias, but currently the approach is relatively expensive and bioinformatically complex. …

[HTML][HTML] Whole-genome DNA methylation profiling identifies epigenetic signatures of uterine carcinosarcoma

J Li, X Xing, D Li, B Zhang, DG Mutch, IS Hagemann… - Neoplasia, 2017 - Elsevier
… We have analyzed the epigenetic profile of UCS components in comparison with nontumor
… In conclusion, in this study, we have used next-generation DNA methylation profiling to …

Comparative whole genome DNA methylation profiling of cattle sperm and somatic tissues reveals striking hypomethylated patterns in sperm

Y Zhou, EE Connor, DM Bickhart, C Li… - …, 2018 - academic.oup.com
… aimed to profile the cattle sperm DNA methylome … DNA methylation profiles using the
whole-genome bisulfite sequencing (WGBS) method. We investigated the landscapes of the DNA