Developmental features of DNA methylation during activation of the embryonic zebrafish genome

IS Andersen, AH Reiner, H Aanes, P Aleström, P Collas - Genome biology, 2012 - Springer
zebrafish, we address here whether DNA methylation may pre-pattern early developmental
gene … Our data suggest a pre-patterning of developmental gene repression by a combination …

The Zebrafish Information Network (ZFIN): a resource for genetic, genomic and developmental research

J Sprague, E Doerry, S Douglas… - Nucleic acids …, 2001 - academic.oup.com
genomic and developmental zebrafish data, (ii) provide meaningful ways of relating genes to
mutations to facilitate the understanding of gene … mutant phenotypes and gene expression, …

[HTML][HTML] Identification of cis regulatory features in the embryonic zebrafish genome through large-scale profiling of H3K4me1 and H3K4me3 binding sites

AW Aday, LJ Zhu, A Lakshmanan, J Wang… - Developmental …, 2011 - Elsevier
developmental pathways. In this study, we have applied ChIP-Seq on zebrafish embryos to
identify genomic … As in mammalian cells, we find that zebrafish promoters are enriched for …

Defining the boundaries of zebrafish developmental genetics

AL Felsenfeld - Nature genetics, 1996 - nature.com
… describes a reference cross panel for mapping zebrafish loci at 0.1 centiMorgans using
simple sequence polymorphisms". This is not the first zebrafish genome mapping tool", nor will it …

Understanding and editing the zebrafish genome

GK Varshney, R Sood, SM Burgess - Advances in genetics, 2015 - Elsevier
… of genetic and genomic resources and online tools that zebrafish researchers can use to …
zebrafish have many features that make them an ideal system for genetics and developmental

The identification of genes with unique and essential functions in the development of the zebrafish, Danio rerio

P Haffter, M Granato, M Brand, MC Mullins… - …, 1996 - journals.biologists.com
… As the visibility of the various organs and tissues depends on the developmental age of the
… to the Drosophila genome, the zebrafish genome, for many cases tested, contains large gene

Evolutionary developmental biology and genomics

C Cañestro, H Yokoi, JH Postlethwait - Nature reviews genetics, 2007 - nature.com
… An informative example comes from the zebrafish co-orthologues of FGF8. Becker and
colleagues 104 randomly inserted reporters into the zebrafish genome and found four that …

Zebrafish in functional genomics and aquatic biomedicine

P Aleström, JL Holter, R Nourizadeh-Lillabadi - Trends in biotechnology, 2006 - cell.com
… The forward genetics approach has provided information on the early developmental
gene relationships in the zebrafish. Attempts to circumvent the need for positional cloning in …

Genome-wide survey and developmental expression mapping of zebrafish SET domain-containing genes

XJ Sun, PF Xu, T Zhou, M Hu, CT Fu, Y Zhang, Y Jin… - PloS one, 2008 - journals.plos.org
… are generated by genome-scale duplication instead of random gene duplication. In addition…
all 12 zebrafish gene pairs and the conserved syntenies between zebrafish and human were …

[HTML][HTML] Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements

D Baranasic, M Hörtenhuber, PJ Balwierz, T Zehnder… - Nature …, 2022 - nature.com
… Here we describe the establishment and provision of a zebrafish developmental genomics
resource as a track hub and downloadable resource within a data coordination center, which …