CottonMD: a multi-omics database for cotton biological study

Z Yang, J Wang, Y Huang, S Wang, L Wei… - … Acids Research, 2023 - academic.oup.com
… switching to different databases. In this study, we constructed a cotton multi-omics database
(designated as CottonMD, http://yanglab.hzau.edu.cn/CottonMD/) by mining and integrating …

Multiomics approaches to explore drought tolerance in cotton

I Sharif, S Aleem, JA Junaid, Z Ali, M Aleem… - … of Cotton Research, 2024 - Springer
… Utilization of multi-omics approaches for investigating … with techniques of molecular biology
and cell biology, to explore … Meanwhile, the availability of online cotton databases facilitate …

MODMS: a multi-omics database for facilitating biological studies on alfalfa (Medicago sativa L.)

L Fang, T Liu, M Li, XM Dong, Y Han, C Xu… - … Research, 2024 - academic.oup.com
… [29]; the Hsf database (http://hsfdb.bio2db.com), a database of … database of citrus genomic
variations [31]; CottonMD (https://yanglab.hzau.edu.cn/CottonMD), a comprehensive database

SoyMD: a platform combining multi-omics data with various tools for soybean research and breeding

Z Yang, C Luo, X Pei, S Wang, Y Huang… - … Acids Research, 2024 - academic.oup.com
multi-omics database-SoyMD. In comparison to other available multi-omics databases, …
, including genome sequencing, molecular biology and artificial intelligence, are expected …

BnIR: A multi-omics database with various tools for Brassica napus research and breeding

Z Yang, S Wang, L Wei, Y Huang, D Liu, Y Jia, C Luo… - Molecular Plant, 2023 - cell.com
… In the post-genome-wide association study era, multi-omics techniques have shown
great … genomics research. However, due to the lack of effective data integration and multi-omics

Comparative proteomic analysis of seed germination between allotetraploid cotton Gossypium hirsutum and Gossypium barbadense

A Huwanixi, Z Peng, S Li, Y Zhou, S Zhao, C Wan - Journal of Proteomics, 2024 - Elsevier
… species and collected samples from each phase with three biologicalstudy's G. hirsutum
protein quantification data and a previous transcriptomic study from the CottonMD database

[HTML][HTML] Transcriptional and translational landscape fine-tune genome annotation and explores translation control in cotton

G Qanmber, Q You, Z Yang, L Fan, Z Zhang… - … of Advanced Research, 2024 - Elsevier
… method, based on multi-omics, for discovering … three biological replicates each for ovule
(0 DPA), 5, 10, and 20 DPA (days post-anthesis) fiber tissues from both ZM24 and pag1 cotton

Evolution and subfunctionalization of CIPK6 homologous genes in regulating cotton drought resistance

W Sun, L Xia, J Deng, S Sun, D Yue, J You… - Nature …, 2024 - nature.com
… hirsutum), and the expression of GhCIPK6D1 and GhCIPK6D3 and their biological functions
in … hirsutum cultivar Jin668 and YZ1 were used in this study. Seeds of Jin668 were used for …

Transcriptional regulation of phospholipid transport in cotton fiber elongation by GhMYB30D04–GhHD1 interaction complex

Q Song, C Du, Y Xu, J Wang, M Lin… - … Integrative Plant Biology, 2024 - Wiley Online Library
… Transcriptome‐wide association studies (TWAS) of CottonMD database was applied to
determine whether the expressions of GhMYB30D04 and GhLTPG1 are associated with fiber …

Anthocyanin gene enrichment in the distal region of cotton chromosome A07: mechanisms of reproductive organ coloration

L Zheng, J Zhang, H He, Z Meng, Y Wang… - Frontiers in Plant …, 2024 - frontiersin.org
… Methods and results: In this study, we identify MGCs linked to the coloration of cotton
reproductive organs, such as petals, spots, and fibers. Through genetic analysis and map-based …