… -specific transcriptome analysis in allotetraploid cotton. We also present a characterization
of the functional properties of the cotton transcriptome and analyses of molecular evolution …

… homoeologous recombination. The identity of Ph2 remains elusive, the only information
available so far is a list of 218 genes … , meiotic recombination influences the evolutionary fate of a …

… of both homeologs (duplicate homologous genes derived from … We report the transcriptome
characterization of T. dubius, … miscellus is homeologous recombination, in which fragments …

… analysis provides invaluable insights into allopolyploid plants by elucidating the fate of
duplicated genes, revealing evolutionary … challenging aspects of transcriptome analysis, explain …

… is characterized by a heavy loss of duplicated genes following … duplication can arise via
the homologous recombination … because pairs of homologous genes between these pairs of …

… Molecular evolution analysis suggested that these duplicated genes are equally evolved …
Therefore, we propose that homologous recombination caused this inversion: Two identical …

… of duplicate gene expression, including an overestimation of … subgenome) homoeologs in
the polyploid AD 1 transcriptomes, … In the following analysis, we binned homoeologous gene …

… families dispersed within a high recombination region. The … the prolamin genes is the presence
of multiple tandemly duplicated gene … background facilitated our transcriptome analysis to …

… The analysis was used to investigate the phenomenon of … The retention of duplicated genes
does not occur randomly. … gene pair was homologous, it was classified into the gene cluster …

… Integrated large-scale genome and transcriptome datasets … , and gene conversion underlying
duplicate gene evolution. In … new analysis supported that the number of duplicated gene …