Optimization of large-scale mouse brain connectome via joint evaluation of DTI and neuron tracing data

H Chen, T Liu, Y Zhao, T Zhang, Y Li, M Li, H Zhang… - Neuroimage, 2015 - Elsevier
DTI tractography in constructing large-scale connectome? To answer this question, we …
neuron tracing data of 1772 experiments on the mouse brain released by the Allen Mouse Brain

Construct and assess multimodal mouse brain connectomes via joint modeling of multi-scale DTI and neuron tracer data

H Chen, Y Zhao, T Zhang, H Zhang, H Kuang… - … Image Computing and …, 2014 - Springer
… Streamline fiber tractography was performed using DTI Studio [8] … To analyze large-scale
mouse brain connectomes in different … optimisation method for robust affine registration of brain

Optimization of macaque brain DMRI connectome by neuron tracing and myelin stain data

T Zhang, J Kong, K Jing, H Chen, X Jiang, L Li… - … Medical Imaging and …, 2018 - Elsevier
… , we construct large-scale connectome with a … using sensitivity and specificity in evaluating
and estimating tractography parameters is to answer two questions: 1) to what extent are DTI

Whole mouse brain structural connectomics using magnetic resonance histology

N Wang, RJ Anderson, A Badea, G Cofer… - Brain Structure and …, 2018 - Springer
… encode information from many sources (synapses, neurons, … We optimized the k-space
sampling strategy for CS diffusion … and a large-scale connectome in a single mouse brain, that …

Connectome imaging for mapping human brain pathways

Y Shi, AW Toga - Molecular psychiatry, 2017 - nature.com
… Presently, the term diffusion tensor imaging (DTI) is almost … For large-scale studies such
as the HCP, we need to … Optimization of existing connectome protocols for a given time frame …

[HTML][HTML] Using mesoscopic tract-tracing data to guide the estimation of fiber orientation distributions in the mouse brain from diffusion MRI

Z Liang, TM Arefin, CH Lee, J Zhang - Neuroimage, 2023 - Elsevier
… In this dataset, the soma, dendrites, and axons of selected neurons labelled using low-titer …
The network can be extended to include dMRI data acquired using optimized parameters or …

[HTML][HTML] Cytoarchitecture of the mouse brain by high resolution diffusion magnetic resonance imaging

N Wang, LE White, Y Qi, G Cofer, GA Johnson - Neuroimage, 2020 - Elsevier
… The goal of this present work is to optimize MRH methods for … are dense with small stellate
neurons, interneurons, and glia … In vivo human brain DTI at submillimeter isotropic resolution (…

Connectomic analysis of brain networks: novel techniques and future directions

JL Cazemier, F Clascá, PHE Tiesinga - Frontiers in neuroanatomy, 2016 - frontiersin.org
neuron doctrine has shaped our understanding of the brain: … that used for the Mouse
Connectome Project. In the Allen … viral tracing and a DTI measurement on the same brain, or can …

Towards reliable reconstruction of the mouse brain thalamocortical connectivity using diffusion MRI

TM Arefin, CH Lee, Z Liang, H Rallapalli, YZ Wadghiri… - bioRxiv, 2022 - biorxiv.org
… Hence, in this study, we aimed to optimize the imaging and … assessment of structural
connectome of the mouse brain that … the possibility of seeking neural connections within largely …

Imaging the structural connectome with hybrid diffusion MRI-microscopy tractography

S Zhu, IN Huszar, M Cottaar, G Daubney, N Eichert… - bioRxiv, 2024 - biorxiv.org
… the pathways of neural connections in animal brains over many … a single orientation per
voxel (eg from DTI)28. By extracting the … D) The tractography results are optimized with XTRACT …