A comprehensive phylogenomic platform for exploring the angiosperm tree of life

WJ Baker, P Bailey, V Barber, A Barker… - Systematic …, 2022 - academic.oup.com
… Here, we describe a comprehensive phylogenomic platform for exploring the angiosperm
tree of life, comprising a set of open tools and data based on the 353 nuclear genes targeted …

[PDF][PDF] A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life

RS Cook, S Dodsworth, N Epitawalage, E Françoso… - 2021 - scholar.archive.org
… Here, we describe a comprehensive phylogenomic platformexploring the angiosperm
tree of life, comprising a set of open … -scale effort to establish a new phylogenomic platform for …

Exploring Angiosperms353: An open, community toolkit for collaborative phylogenomic research on flowering plants

WJ Baker, S Dodsworth, F Forest, SW Graham… - 2021 - ttu-ir.tdl.org
… In this context, the importance of a comprehensive understanding of the angiosperm tree
of life cannot be overstated. The tree of life is the fundamental, biological roadmap to the …

[HTML][HTML] Exploring Angiosperms353: Developing and applying a universal toolkit for flowering plant phylogenomics

AJ McDonnell, WJ Baker, S Dodsworth… - Applications in Plant …, 2021 - ncbi.nlm.nih.gov
… useful phylogenetic signal at deep and recent time scales. The probe sequences were designed
from ~600 angiosperm … sequence similarity to other angiosperms, while minimizing the …

Comprehensive phylogenomic time tree of bryophytes reveals deep relationships and uncovers gene incongruences in the last 500 million years of diversification

J Bechteler, G Peñaloza‐Bojacá, D Bell… - American Journal of …, 2023 - Wiley Online Library
… of loci across a broad phylogenetic spectrum spanning at least … to explore the mechanisms
underlying the phylogenetic … of angiosperms and ferns (Schuettpelz and Pryer, 2009). The …

DateLife: leveraging databases and analytical tools to reveal the dated Tree of Life

LL Sánchez Reyes, EJ McTavish… - Systematic Biology, 2024 - academic.oup.com
… Here we present DateLife, a phylogenetic software … that is curated from Open Tree of Life’s
phylogenetic repository, and extract … Again, we urge readers and DateLife users to explore all …

Plastid phylogenomic insights into relationships of all flowering plant families

HT Li, Y Luo, L Gan, PF Ma, LM Gao, JB Yang, J Cai… - BMC biology, 2021 - Springer
… analyses based on plastid genes, and more recently complete or nearly complete plastomes,
have led the way in reconstructing the phylogenetic backbone for angiosperms over the …

Mitochondrial genes from 18 angiosperms fill sampling gaps for phylogenomic inferences of the early diversification of flowering plants

JY Xue, SS Dong, MQ Wang, TQ Song… - … of Systematics and …, 2022 - Wiley Online Library
… of angiosperms is thought to have been a rapid process, which may complicate phylogenetic
analyses of early angiosperm … for exploring the early evolution and diversification of the …

Easy353: A tool to get Angiosperms353 genes for phylogenomic research

Z Zhang, P Xie, Y Guo, W Zhou, E Liu… - Molecular Biology and …, 2022 - academic.oup.com
… low-copy nuclear genes that were selected by examining more than 600 angiosperm
species. These genes can be used for phylogenetic studies and population genetics at multiple …

An open and continuously updated fern tree of life

JH Nitta, E Schuettpelz, S Ramírez-Barahona… - Frontiers in Plant …, 2022 - frontiersin.org
… of vascular plants after angiosperms. They have been the … (tree) that can then be used “as–is”
by biologists studying these … as a constraint tree to conduct initial phylogenetic analysis of …