… Gaps in the MUM alignment can be also caused by sequences that have large numbers
of differences, but that still should be aligned in the whole genome alignment. Because the …

… For our purposes in this article, we call any alignment that allows rearrangements (ie, does
… whole-genome alignment (or for short, a genome alignment). Most whole-genome alignment …

… -genomes, and genome evolution. Results: We present a new multiple alignment tool for
whole genomes … efficient and can align 31 Streptococcus pneumoniae genomes in less than 2 …

… in the more general problem of whole-genome alignment (WGA). Using the same … genomes.
In total, 35 submissions were assessed, submitted by 10 teams using 12 different alignment …

… As we mentioned above, an alignment of the whole human and mouse genomes represents
an algorithmic challenge and yet holds the promise of significant biological understanding. …

… whole-genome aligners and offer a set of methodological challenges that need to be tackled
in order to make the most effective use of our rapidly growing databases of whole genomes. …

… because of frequent whole-genome duplications (WGDs) as … classical pairwise and multiple
genome alignment (MGA) … genome alignment and the interpretation of alignment results …

… whole-genome aligners and offer a set of methodological challenges that need to be tackled
in order to make most effective use of our rapidly growing databases of whole genomes. …

… a whole-genome multiple alignment of the three currently available mammalian genomes
… Berkeley Genome Pipeline and the LAGAN program. The strategy is based on progressive …

… to frame our discussion of alignment methods. After reviewing the latest in alignment
technology, we discuss methods that utilize whole-genome alignments for biological discovery. …