An improved pig reference genome sequence to enable pig genetics and genomics research

A Warr, N Affara, B Aken, H Beiki, DM Bickhart… - …, 2020 - academic.oup.com
improved Duroc assembly (Sscrofa11.1) become the reference genome for genomic
research in pigspig genome sequences that provide substantially improved resources for …

Modern genetic and genomic improvement of the pig

BE Mote, MF Rothschild - Animal Agriculture, 2020 - Elsevier
Genetic markers identified within these genes enableswine genome researchers, called
the International Swine … quality draft reference genome sequence of a single domesticated pig (…

Comprehensive variation discovery and recovery of missing sequence in the pig genome using multiple de novo assemblies

M Li, L Chen, S Tian, Y Lin, Q Tang, X Zhou… - … research, 2017 - genome.cshlp.org
genome de novo sequencing relative to resequencing and provide valuable genetic resources
that enable effective use of pigs … future functional analyses and improvements of pig as an …

Improving and Going Beyond Reference Genomes

M García-Sancho, J Lowe - A History of Genomics across Species …, 2023 - Springer
… the existence of reference genomes enabled the creation of … We also examine research on
pig genomic diversity across … we saw in swine genome sequencing at the Sanger Institute. …

A high utility integrated map of the pig genome

SJ Humphray, CE Scott, R Clark, B Marron, C Bender… - Genome biology, 2007 - Springer
… -scale genomic sequencing and enabled focused cloning … the pig research community and
further facilitating use of the pig as … thus improve the coverage of the initial assembly of the pig

The Pig Community and Their Reference Genome

M García-Sancho, J Lowe - A History of Genomics across Species …, 2023 - Springer
… a full reference sequence: the Swine Genome Sequencing … companies (such as the Pig
Improvement Company, or PIC, … sequence of the yeast genome, would enable researchers to …

PigGIS: pig genomic informatics system

J Ruan, Y Guo, H Li, Y Hu, F Song… - … Acids Research, 2007 - academic.oup.com
… employed to enable principle TraceView … improving the handling of the known problems
listed above, and retrieving and integrating useful knowledge behind the pig genome sequences

[HTML][HTML] Accelerated discovery of functional genomic variation in pigs

MFL Derks, C Gross, MS Lopes, MJT Reinders… - Genomics, 2021 - Elsevier
… the population whole genome sequence, the impact scores (… However, identifying these
underlying pathways enable … could significantly improve across-breed genomic prediction. …

High-resolution autosomal radiation hybrid maps of the pig genome and their contribution to the genome sequence assembly

B Servin, T Faraut, N Iannuccelli, D Zelenika, D Milan - BMC genomics, 2012 - Springer
… of the pig genome assembly, and how the RH maps enabled the … The main objective of this
study was to compare the SNP order … Before proposing improvements to the pig genome, we …

The SWine IMputation (SWIM) haplotype reference panel enables nucleotide resolution genetic mapping in pigs

R Ding, R Savegnago, J Liu, N Long, C Tan… - Communications …, 2023 - nature.com
… this resource to facilitate genetic mapping and accelerate genetic improvement in pigs. … In
this study, we produced whole-genome sequence data from 1530 newly sequenced pigs and …