Breakdown of phylogenetic signal: a survey of microsatellite densities in 454 shotgun sequences from 154 non model eukaryote species

E Meglecz, G Neve, E Biffin, MG Gardner - PLoS One, 2012 - journals.plos.org
… In this study, we examined microsatellite coverage and motif patterns from … study we use
454 shotgun sequences from 154 non-model species of Eukaryotes, to compare microsatellite

[PDF][PDF] Breakdown of Phylogenetic Signal: A Survey of Microsatellite Densities in 454 Shotgun Sequences from

E Meglécz, G Neve, E Biffin, MG Gardner - 2012 - academia.edu
… In this study, we examined microsatellite coverage and motif patterns from … study we use
454 shotgun sequences from 154 non-model species of Eukaryotes, to compare microsatellite

Microsatellite markers from the I on T orrent: a multi‐species contrast to 454 shotgun sequencing

CP Elliott, NJ Enright, RJN Allcock… - Molecular Ecology …, 2014 - Wiley Online Library
… The proportion of sequences that contained microsatellites was … The distribution of read
lengths of these microsatellite-… low microsatellite density, such as the two species in this study, …

Microsatellite landscape evolutionary dynamics across 450 million years of vertebrate genome evolution

RH Adams, H Blackmon, J Reyes-Velasco… - …, 2016 - cdnsciencepub.com
… In this study, we analyzed patterns of genomic microsatellite … divergent patterns of microsatellite
motif density across species, … ) microsatellite loci from modest amounts of 454 shotgun

Characterization of Microsatellite Loci and Repeat Density in the Gooseneck Barnacle, Pollicipes elegans, Using Next Generation Sequencing

LV Plough, PB Marko - Journal of Heredity, 2014 - academic.oup.com
… Roche 454 pyrosequencing to develop microsatellite markers … the genomic frequency
and distribution of repeat types, … Though our shotgun 454 reads represent only a fraction of …

Cost effective microsatellite isolation and genotyping by high throughput sequencing

H Krehenwinkel, S Meese, C Mayer, J Ruch… - The Journal of …, 2019 - BioOne
… and the resulting high marker density is not always necessary. … on which the microsatellite
loci used in this study were designed… ) microsatellite loci from modest amounts of 454 shotgun

[HTML][HTML] Microsatellite markers: what they mean and why they are so useful

MLC Vieira, L Santini, AL Diniz… - Genetics and molecular …, 2016 - SciELO Brasil
… of these sequences over the last decades this review aims to … density of repeat sequences
was higher in introns and coding … Currently, 454 and Illumina are the NGS platforms most …

Characterization of microsatellites and gene contents from genome shotgun sequences of mungbean (Vigna radiata (L.) Wilczek)

S Tangphatsornruang, P Somta, P Uthaipaisanwong… - BMC Plant …, 2009 - Springer
… Low coverage shotgun sequencing using 454 sequencing technology has also been used
to study … Here, we report genome shotgun sequencing of the mungbean genomic DNA using …

The report of my death was an exaggeration: a review for researchers using microsatellites in the 21st century

RGJ Hodel, MC Segovia‐Salcedo… - Applications in plant …, 2016 - Wiley Online Library
… Using shotgun sequencing to identify loci allows for random … from 454 or Illumina and design
primers from large sequencesstudy designs simply do not require the high marker density

Exploring Pandora's box: potential and pitfalls of low coverage genome surveys for evolutionary biology

F Leese, P Brand, A Rozenberg, C Mayer, S Agrawal… - PLoS …, 2012 - journals.plos.org
… generally mirror the microsatellite distribution in the genome [… the highest genomic microsatellite
density reported so far for a … our study we used 454 pyrosequencing as the sequencing