Breakdown of phylogenetic signal: a survey of microsatellite densities in 454 shotgun sequences from 154 non model eukaryote species
E Meglecz, G Neve, E Biffin, MG Gardner - PLoS One, 2012 - journals.plos.org
… In this study, we examined microsatellite coverage and motif patterns from … study we use
454 shotgun sequences from 154 non-model species of Eukaryotes, to compare microsatellite …
454 shotgun sequences from 154 non-model species of Eukaryotes, to compare microsatellite …
[PDF][PDF] Breakdown of Phylogenetic Signal: A Survey of Microsatellite Densities in 454 Shotgun Sequences from
E Meglécz, G Neve, E Biffin, MG Gardner - 2012 - academia.edu
… In this study, we examined microsatellite coverage and motif patterns from … study we use
454 shotgun sequences from 154 non-model species of Eukaryotes, to compare microsatellite …
454 shotgun sequences from 154 non-model species of Eukaryotes, to compare microsatellite …
Microsatellite markers from the I on T orrent: a multi‐species contrast to 454 shotgun sequencing
… The proportion of sequences that contained microsatellites was … The distribution of read
lengths of these microsatellite-… low microsatellite density, such as the two species in this study, …
lengths of these microsatellite-… low microsatellite density, such as the two species in this study, …
Microsatellite landscape evolutionary dynamics across 450 million years of vertebrate genome evolution
… In this study, we analyzed patterns of genomic microsatellite … divergent patterns of microsatellite
motif density across species, … ) microsatellite loci from modest amounts of 454 shotgun …
motif density across species, … ) microsatellite loci from modest amounts of 454 shotgun …
Characterization of Microsatellite Loci and Repeat Density in the Gooseneck Barnacle, Pollicipes elegans, Using Next Generation Sequencing
… Roche 454 pyrosequencing to develop microsatellite markers … the genomic frequency
and distribution of repeat types, … Though our shotgun 454 reads represent only a fraction of …
and distribution of repeat types, … Though our shotgun 454 reads represent only a fraction of …
Cost effective microsatellite isolation and genotyping by high throughput sequencing
… and the resulting high marker density is not always necessary. … on which the microsatellite
loci used in this study were designed… ) microsatellite loci from modest amounts of 454 shotgun …
loci used in this study were designed… ) microsatellite loci from modest amounts of 454 shotgun …
[HTML][HTML] Microsatellite markers: what they mean and why they are so useful
… of these sequences over the last decades this review aims to … density of repeat sequences
was higher in introns and coding … Currently, 454 and Illumina are the NGS platforms most …
was higher in introns and coding … Currently, 454 and Illumina are the NGS platforms most …
Characterization of microsatellites and gene contents from genome shotgun sequences of mungbean (Vigna radiata (L.) Wilczek)
… Low coverage shotgun sequencing using 454 sequencing technology has also been used
to study … Here, we report genome shotgun sequencing of the mungbean genomic DNA using …
to study … Here, we report genome shotgun sequencing of the mungbean genomic DNA using …
The report of my death was an exaggeration: a review for researchers using microsatellites in the 21st century
RGJ Hodel, MC Segovia‐Salcedo… - Applications in plant …, 2016 - Wiley Online Library
… Using shotgun sequencing to identify loci allows for random … from 454 or Illumina and design
primers from large sequences … study designs simply do not require the high marker density …
primers from large sequences … study designs simply do not require the high marker density …
Exploring Pandora's box: potential and pitfalls of low coverage genome surveys for evolutionary biology
… generally mirror the microsatellite distribution in the genome [… the highest genomic microsatellite
density reported so far for a … our study we used 454 pyrosequencing as the sequencing …
density reported so far for a … our study we used 454 pyrosequencing as the sequencing …