… modules in CHARMM-GUI, demonstrating diverse biomolecular systems that CHARMM-GUI
supports to carry out innovative and novel biomolecular modeling and simulation research …

… In this study, we revise LJ parameters in CHARMM force field for pairwise interactions of …
simulating osmosis and electrophoresis phenomena for calcium salts and matching simulation …

… CHARMM was first described in JCC in 1983,22 although its earlier implementations …
biomolecules for a number of years.23 CHARMM is a general and flexible molecular simulation …

… to prepare complex biomolecular systems and input files for molecular simulations. During
the 13 years of successful services, CHARMM-GUI has contributed to facilitate molecular …

… In recent years, several CHARMM-GUI modules have … CHARMM-GUI and used without
further modification to perform μs time scale simulations of chemically very complex biomolecular …

… an update of CHARMM-GUI Martini Maker for coarse-grained modeling and simulation of
complex … of these membranes are only just being reported in the last couple of years.28, 29 …

… In recent years, PPI prediction methods based on protein … , such as Ligand Reader & Modeler
for generation of the CHARMM-… useful in advanced biomolecular modeling and simulation. …

… innovative applications in the CHARMM-GUI user community. … ) that cited or used
CHARMM-GUI for membrane simulations, we … of biomolecules is treated by MM. QM/MM Interfacer …

… popular biomolecular force fields. Additionally, we present a detailed discussion of the CHARMM
Drude … applications through many years of widespread usage, the availability of longer …

… biomolecules. It facilitates building glycoprotein and glycolipid structure files for use with
CHARMM … the ability to generate Sander input files for running molecular dynamics simulations. …