Genome-wide association study identifies new prostate cancer susceptibility loci

FR Schumacher, SI Berndt, A Siddiq… - Human molecular …, 2011 - academic.oup.com
Human molecular genetics, 2011academic.oup.com
Prostate cancer (PrCa) is the most common non-skin cancer diagnosed among males in
developed countries and the second leading cause of cancer mortality, yet little is known
regarding its etiology and factors that influence clinical outcome. Genome-wide association
studies (GWAS) of PrCa have identified at least 30 distinct loci associated with small
differences in risk. We conducted a GWAS in 2782 advanced PrCa cases (Gleason grade≥
8 or tumor stage C/D) and 4458 controls with 571 243 single nucleotide polymorphisms …
Abstract
Prostate cancer (PrCa) is the most common non-skin cancer diagnosed among males in developed countries and the second leading cause of cancer mortality, yet little is known regarding its etiology and factors that influence clinical outcome. Genome-wide association studies (GWAS) of PrCa have identified at least 30 distinct loci associated with small differences in risk. We conducted a GWAS in 2782 advanced PrCa cases (Gleason grade ≥ 8 or tumor stage C/D) and 4458 controls with 571 243 single nucleotide polymorphisms (SNPs). Based on in silico replication of 4679 SNPs (Stage 1, P < 0.02) in two published GWAS with 7358 PrCa cases and 6732 controls, we identified a new susceptibility locus associated with overall PrCa risk at 2q37.3 (rs2292884, P= 4.3 × 10−8). We also confirmed a locus suggested by an earlier GWAS at 12q13 (rs902774, P= 8.6 × 10−9). The estimated per-allele odds ratios for these loci (1.14 for rs2292884 and 1.17 for rs902774) did not differ between advanced and non-advanced PrCa (case-only test for heterogeneity P= 0.72 and P= 0.61, respectively). Further studies will be needed to assess whether these or other loci are differentially associated with PrCa subtypes.
Oxford University Press
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