Integrative analysis of large scale transcriptome data draws a comprehensive landscape of Phaeodactylum tricornutum genome and evolutionary origin of diatoms

A Rastogi, U Maheswari, RG Dorrell, FRJ Vieira… - Scientific reports, 2018 - nature.com
… Here, we have used 90 RNA-Seq datasets from different … The new annotation additionally
permitted the discovery of extensive … Finally, we have performed a comprehensive de novo …

Large-scale data integration framework provides a comprehensive view on glioblastoma multiforme

K Ovaska, M Laakso, S Haapa-Paananen, R Louhimo… - Genome medicine, 2010 - Springer
analysis and visualization of multidimensional and heterogeneous data by Anduril enables
drawing … We used Anduril to analyze high-throughput SNP, copy number, transcriptomics, …

Comprehensive analysis of transcriptome variation uncovers known and novel driver events in T-cell acute lymphoblastic leukemia

Z Kalender Atak, V Gianfelici, G Hulselmans… - PLoS …, 2013 - journals.plos.org
… Among the previously published large scale RNA-seq cancer studies, only a handful … were
drawn for the positions that are novel SNVs in either of the RNA-seq or Exome-seq data and …

Genomics pipelines and data integration: challenges and opportunities in the research setting

J Davis-Turak, SM Courtney, ES Hazard… - Expert review of …, 2017 - Taylor & Francis
… and phenotype on a massive scale. These new technologies … with comprehensive data
tracking, analysis provenance and a … draw relationships and insights from ever growing genomic …

[HTML][HTML] Integrative analysis of imaging and transcriptomic data of the immune landscape associated with tumor metabolism in lung adenocarcinoma: clinical and …

H Choi, KJ Na - Theranostics, 2018 - ncbi.nlm.nih.gov
… 2D TME landscape map based on t-SNE was drawn with TMI … estimated based on mRNA
transcriptome data. Even though … , comprehensive multimodal analysis including transcriptome

[PDF][PDF] Integrative analysis of large scale transcriptome data draws 1 landscape of Phaeodactylum tricornutum genome and evolutionary origin of diatoms 2

A Rastogi, U Maheswari, RG Dorrell, F Maumus… - academia.edu
… 33 analysis in which we serially removed the closest relatives of P. tricornutum in our sequence
34 library (which includes seven complete diatom genomes and transcriptomesanalysis. …

Giotto: a toolbox for integrative analysis and visualization of spatial expression data

R Dries, Q Zhu, R Dong, CHL Eng, H Li, K Liu, Y Fu… - Genome biology, 2021 - Springer
… , a comprehensive and open-source toolbox for spatial data … now adopted spatial transcriptomic
analysis functionalities, … spatial transcriptomic data analysis, whereas the data structure …

Integrative analysis of large scale transcriptome data draws a comprehensive functional landscape of Phaeodactylum tricornutum genome and evolutionary origin of …

A Rastogi, U Maheswari, RG Dorrell, F Maumus… - bioRxiv, 2017 - biorxiv.org
… , our reference library contains a much larger amount of red algal sequence information,
including five complete genomes, and large-scale transcriptomes for a further twelve red algal …

Integrative analysis of genomic and transcriptomic data of normal, tumour, and co‐occurring leukoplakia tissue triads drawn from patients with gingivobuccal oral …

A Ghosh, C Das, S Ghose, A Maitra… - The Journal of …, 2022 - Wiley Online Library
… and adjacent normal tissue and whole transcriptome sequence data were generated (the
right… analysis of whole-exome and transcriptomic data. AG, CD, PPM and NKB wrote the article. …

The road towards data integration in human genomics: players, steps and interactions

A Bernasconi, A Canakoglu… - Briefings in …, 2021 - academic.oup.com
… However, to the best of our knowledge, a comprehensive … We drew the relationships between
these players according to … from data generation to the application of integrative analyses