Pacific salmon encounter widely varying environmental conditions across populations. Performance traits and environmental tolerance limits are predicted to be related to the typical abiotic and biotic conditions encountered by each population. Endurance swim performance at three different temperatures (8, 12, 22 °C) was compared across nine populations of sockeye salmon (Oncorhynchus nerka (Walbaum, 1792)) parr from British Columbia, Canada, reared in a common laboratory environment. In addition, relative ventricular mass (RVM) was compared between good and poor performers from each population. Populations significantly differed in endurance swim performance and these differences were related to the natal lake environment. Specifically, parr populations that reside in warm, shallow lakes (Okanagan, Scotch, and Stellako) had superior swim performance at 12 °C compared with 8 °C. All other populations from deeper, cooler lakes had equivalent swim performance at 8 and 12 °C. Individual variability in swim performance within a population was not due to differences in cardiac size. Similarly, RVM did not vary across parr populations, suggesting that population differences in swim performance were not associated with cardiac size. This study provides further support that sockeye salmon parr are locally adapted to their environmental conditions.