[HTML][HTML] Model selection may not be a mandatory step for phylogeny reconstruction
… model that was used to simulate the data (ie, the true model). While our initial hypothesis
was that a model selection step would … +I+G model were highly similar to the model selection …
was that a model selection step would … +I+G model were highly similar to the model selection …
ModelTeller: model selection for optimal phylogenetic reconstruction using machine learning
… The focus of this study is optimal phylogeny reconstruction. … model, but do not produce the
most accurate phylogenies. Then, … a two-step procedure for optimal phylogeny reconstruction, …
most accurate phylogenies. Then, … a two-step procedure for optimal phylogeny reconstruction, …
Consequences of substitution model selection on protein ancestral sequence reconstruction
R Del Amparo, M Arenas - Molecular biology and evolution, 2022 - academic.oup.com
… model selection on the accuracy of phylogenetic reconstructions … ) if the applied model does
not fit well with the studied data. … of evolution may not be a mandatory task for phylogenetic …
not fit well with the studied data. … of evolution may not be a mandatory task for phylogenetic …
[HTML][HTML] Influence of substitution model selection on protein phylogenetic tree reconstruction
R Del Amparo, M Arenas - Gene, 2023 - Elsevier
… the selection of a substitution model of protein evolution is not required for proper phylogenetic
tree reconstruction… This could not be the case for real datasets that are not analyzed in the …
tree reconstruction… This could not be the case for real datasets that are not analyzed in the …
Relative model fit does not predict topological accuracy in single-gene protein phylogenetics
SJ Spielman - Molecular biology and evolution, 2020 - academic.oup.com
… relative model selection may not hinder phylogenetic analysis on … In particular, we ask
whether phylogenetic reconstruction … Step-wise linear model selection using R 2 showed that the …
whether phylogenetic reconstruction … Step-wise linear model selection using R 2 showed that the …
Nucleotide substitution model selection is not necessary for Bayesian inference of phylogeny with well-behaved priors
L Guimarães Fabreti, S Höhna - Systematic Biology, 2023 - academic.oup.com
… if substitution model selection is a necessary step for Bayesian phylogenetic inference. …
In this manuscript, we argue that substitution model selection is not necessary and can be …
In this manuscript, we argue that substitution model selection is not necessary and can be …
Neglecting model selection alters phylogenetic inference
M Gerth - bioRxiv, 2019 - biorxiv.org
… to trees reconstructed without prior model selection. While these comparisons do not take
“… I+G4 very often results in accurate phylogenetic estimates even when it is not the best fitting …
“… I+G4 very often results in accurate phylogenetic estimates even when it is not the best fitting …
[HTML][HTML] Relative model selection of evolutionary substitution models can be sensitive to multiple sequence alignment uncertainty
SJ Spielman, ML Miraglia - BMC Ecology and Evolution, 2021 - Springer
… models, the model selection procedure itself may not be a critical step in phylogenetic
reconstruction, since different models … your intended use is not permitted by statutory regulation or …
reconstruction, since different models … your intended use is not permitted by statutory regulation or …
Testing for phylogenetic signal in comparative data: behavioral traits are more labile
… , the existence of phylogenetic signal does not require the ex… 401) concluded that ‘‘it is
mandatory initially to diagnose the … in reconstructing phylogenetic relationships, and hence do not …
mandatory initially to diagnose the … in reconstructing phylogenetic relationships, and hence do not …
Relative model fit does not predict accuracy in single-gene protein phylogenetics
SJ Spielman - bioRxiv, 2019 - biorxiv.org
… relative model selection may not hinder phylogenetic analysis on … In particular, we ask
whether phylogenetic reconstruction … Step-wise linear model selection using R 2 showed that the …
whether phylogenetic reconstruction … Step-wise linear model selection using R 2 showed that the …