Molecular ecological network analyses

Y Deng, YH Jiang, Y Yang, Z He, F Luo, J Zhou - BMC bioinformatics, 2012 - Springer
… and modularity, which were consistent with previously described molecular ecological
networks. Eigengene analysis indicated that the eigengenes represented the module profiles …

Molecular ecological network analyses: an effective conservation tool for the assessment of biodiversity, trophic interactions, and community structure

JM Meyer, K Leempoel, G Losapio… - Frontiers in Ecology and …, 2020 - frontiersin.org
… Here we develop molecular ecological network analyses (MENA) as an ecosystem
assessment tool to address these needs. To construct the ecological network, we used …

The responses and adaptations of microbial communities to salinity in farmland soils: a molecular ecological network analysis

W Zheng, D Xue, X Li, Y Deng, J Rui, K Feng… - Applied Soil Ecology, 2017 - Elsevier
… Further, microbial network interactions changed along the salinity gradient revealed by a
phylogenetic molecular ecological networks (pMENs) analysis. Salinity enhanced the …

Functional molecular ecological networks

J Zhou, Y Deng, F Luo, Z He, Q Tu, X Zhi - MBio, 2010 - Am Soc Microbiol
… However, most methods for relevance network analysis use … ecological networks in microbial
communities can be discerned using the RMT-based network approach and that eCO 2 has …

Merging DNA metabarcoding and ecological network analysis to understand and build resilient terrestrial ecosystems

DM Evans, JJN Kitson, DH Lunt, NA Straw… - … ecology, 2016 - Wiley Online Library
… Here, we describe recent advances in ecological network analysis (ENA) and briefly
examine how DNA-based methods are increasingly used to quantify species interactions, …

Phylogenetic Molecular Ecological Network of Soil Microbial Communities in Response to Elevated CO2

J Zhou, Y Deng, F Luo, Z He, Y Yang - MBio, 2011 - Am Soc Microbiol
… In this study, 24 soil samples used for network analysis of microbial communities were
collected from the Biocon (biodiversity, CO 2 , and N) experimental site located at the Cedar …

Microbial community responses to biochar addition when a green waste and manure mix are composted: a molecular ecological network analysis

X Qiu, G Zhou, J Zhang, W Wang - Bioresource technology, 2019 - Elsevier
… canonical correlation analysis (A) and network analysis (B and C). Network analysis is based
… Our second hypothesis is confirmed by the network analysis because it showed that DOC …

Molecular ecological network analyses revealing the effects of nitrogen application on soil microbial community in the degraded grasslands.

R Zhu, J Liu, J Wang, W Han, Z Shen, X Xin - 2020 - cabidigitallibrary.org
ecological network. Conclusion: Nitrogen application reduced the complexity and tightness
of soil network … of its community network and thus changes its molecular ecological network. …

Integrated metagenomics and molecular ecological network analysis of bacterial community composition during the phytoremediation of cadmium-contaminated soils …

Z Chen, Y Zheng, C Ding, X Ren, J Yuan, F Sun… - … and environmental safety, 2017 - Elsevier
… The molecular ecological network analysis constructed … network and altered the topological
roles of individual OTUs and keystone populations. Through the reconstruction of networks, …

Molecular ecological network analysis reveals the effects of probiotics and florfenicol on intestinal microbiota homeostasis: an example of sea cucumber

G Yang, M Peng, X Tian, S Dong - Scientific Reports, 2017 - nature.com
Molecular ecological network analysis indicated that P. … interactions within the ecological
network. These results … and/or module hubs within the network. In contrast, the use of florfenicol …