Narrowing the conformational space sampled by two-domain proteins with paramagnetic probes in both domains
S Dasgupta, X Hu, PHJ Keizers, WM Liu… - Journal of Biomolecular …, 2011 - Springer
S Dasgupta, X Hu, PHJ Keizers, WM Liu, C Luchinat, M Nagulapalli, M Overhand, G Parigi…
Journal of Biomolecular NMR, 2011•SpringerCalmodulin is a two-domain protein which in solution can adopt a variety of conformations
upon reorientation of its domains. The maximum occurrence (MO) of a set of calmodulin
conformations that are representative of the overall conformational space possibly sampled
by the protein, has been calculated from the paramagnetism-based restraints. These
restraints were measured after inclusion of a lanthanide binding tag in the C-terminal
domain to supplement the data obtained by substitution of three paramagnetic lanthanide …
upon reorientation of its domains. The maximum occurrence (MO) of a set of calmodulin
conformations that are representative of the overall conformational space possibly sampled
by the protein, has been calculated from the paramagnetism-based restraints. These
restraints were measured after inclusion of a lanthanide binding tag in the C-terminal
domain to supplement the data obtained by substitution of three paramagnetic lanthanide …
Abstract
Calmodulin is a two-domain protein which in solution can adopt a variety of conformations upon reorientation of its domains. The maximum occurrence (MO) of a set of calmodulin conformations that are representative of the overall conformational space possibly sampled by the protein, has been calculated from the paramagnetism-based restraints. These restraints were measured after inclusion of a lanthanide binding tag in the C-terminal domain to supplement the data obtained by substitution of three paramagnetic lanthanide ions to the calcium ion in the second calcium binding loop of the N-terminal domain. The analysis shows that the availability of paramagnetic restraints arising from metal ions placed on both domains, reduces the MO of the conformations to different extents, thereby helping to identify those conformations that can be mostly sampled by the protein.
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