Numerical evaluation of methods approximating the distribution of a large quadratic form in normal variables
Quadratic forms of Gaussian variables occur in a wide range of applications in statistics.
They can be expressed as a linear combination of chi-squareds. The coefficients in the
linear combination are the eigenvalues λ 1,…, λ n of Σ A, where A is the matrix representing
the quadratic form and Σ is the covariance matrix of the Gaussians. The previous literature
mostly deals with approximations for small quadratic forms (n< 10) and moderate p-values
(p> 1 0− 2). Motivated by genetic applications, moderate to large quadratic forms (300< n< …
They can be expressed as a linear combination of chi-squareds. The coefficients in the
linear combination are the eigenvalues λ 1,…, λ n of Σ A, where A is the matrix representing
the quadratic form and Σ is the covariance matrix of the Gaussians. The previous literature
mostly deals with approximations for small quadratic forms (n< 10) and moderate p-values
(p> 1 0− 2). Motivated by genetic applications, moderate to large quadratic forms (300< n< …
Quadratic forms of Gaussian variables occur in a wide range of applications in statistics. They can be expressed as a linear combination of chi-squareds. The coefficients in the linear combination are the eigenvalues λ 1,…, λ n of Σ A, where A is the matrix representing the quadratic form and Σ is the covariance matrix of the Gaussians. The previous literature mostly deals with approximations for small quadratic forms (n< 10) and moderate p-values (p> 1 0− 2). Motivated by genetic applications, moderate to large quadratic forms (300< n< 12, 000) and small to very small p-values (p< 1 0− 4) are studied. Existing methods are compared under these settings and a leading-eigenvalue approximation, which only takes the largest k eigenvalues, is shown to have the computational advantage without any important loss in accuracy. For time complexity, a leading-eigenvalue approximation reduces the computational complexity from O (n 3) to O (n 2 k) on extracting eigenvalues and avoids speed problems with computing the sum of n terms. For accuracy, the existing methods have some limits in calculating small p-values under large quadratic forms. Moment methods are inaccurate for very small p-values, and Farebrother’s method is not usable if the minimum eigenvalue is much smaller than others. Davies’s method is usable for p-values down to machine epsilon. The saddlepoint approximation is proved to have bounded relative error for any A and Σ in the extreme right tail, so it is usable for arbitrarily small p-values.
Elsevier
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