On reconstructing a string from its substring compositions
2010 IEEE International Symposium on Information Theory, 2010•ieeexplore.ieee.org
Motivated by protein sequencing, we consider the problem of reconstructing a string from the
compositions of its substrings. We provide several results, including the following. General
classes of strings that cannot be distinguished from their substring compositions. An almost
complete characterization of the lengths for which reconstruction is possible. Bounds on the
number of strings with the same substring compositions in terms of the number of divisors of
the string length plus one. A relation to the turnpike problem and a bivariate polynomial …
compositions of its substrings. We provide several results, including the following. General
classes of strings that cannot be distinguished from their substring compositions. An almost
complete characterization of the lengths for which reconstruction is possible. Bounds on the
number of strings with the same substring compositions in terms of the number of divisors of
the string length plus one. A relation to the turnpike problem and a bivariate polynomial …
Motivated by protein sequencing, we consider the problem of reconstructing a string from the compositions of its substrings. We provide several results, including the following. General classes of strings that cannot be distinguished from their substring compositions. An almost complete characterization of the lengths for which reconstruction is possible. Bounds on the number of strings with the same substring compositions in terms of the number of divisors of the string length plus one. A relation to the turnpike problem and a bivariate polynomial formulation of string reconstruction.
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