Phylogeny of the class Actinobacteria revisited in the light of complete genomes. The orders 'Frankiales' and Micrococcales should be split into coherent entities …
The phylogeny of the class Actinobacteria remains controversial, essentially because it is
very sensitive to the choice of dataset and phylogenetic methods. We used a test proposed
recently, based on complete genome data, which chooses among candidate species
phylogenies based on the number of lateral gene transfers (LGT) needed to explain the
diversity of histories among gene trees for a set of genomes. We used 100 completely
sequenced genomes representing 35 families and 17 orders of the class Actinobacteria and …
very sensitive to the choice of dataset and phylogenetic methods. We used a test proposed
recently, based on complete genome data, which chooses among candidate species
phylogenies based on the number of lateral gene transfers (LGT) needed to explain the
diversity of histories among gene trees for a set of genomes. We used 100 completely
sequenced genomes representing 35 families and 17 orders of the class Actinobacteria and …
Phylogeny of the class Actinobacteria revisited in the light of complete genomes. The orders' Frankiales' and Micrococcales should be split into coherent entities …
AS Arnab Sen, V Daubin, D Abrouk, I Gifford, AM Berry… - 2014 - cabidigitallibrary.org
The phylogeny of the class Actinobacteria remains controversial, essentially because it is
very sensitive to the choice of dataset and phylogenetic methods. We used a test proposed
recently, based on complete genome data, which chooses among candidate species
phylogenies based on the number of lateral gene transfers (LGT) needed to explain the
diversity of histories among gene trees for a set of genomes. We used 100 completely
sequenced genomes representing 35 families and 17 orders of the class Actinobacteria and …
very sensitive to the choice of dataset and phylogenetic methods. We used a test proposed
recently, based on complete genome data, which chooses among candidate species
phylogenies based on the number of lateral gene transfers (LGT) needed to explain the
diversity of histories among gene trees for a set of genomes. We used 100 completely
sequenced genomes representing 35 families and 17 orders of the class Actinobacteria and …
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