REBASE—a database for DNA restriction and modification: enzymes, genes and genomes

RJ Roberts, T Vincze, J Posfai… - Nucleic acids research, 2015 - academic.oup.com
… The previous description of REBASE in the 2010 NAR Database Issue (1) described 3945
data (REBASE LISTS) such as all Type I specificity subunits or the Gold Standard Set are …

HMDB 5.0: the human metabolome database for 2022

DS Wishart, AC Guo, E Oler, F Wang… - … acids research, 2022 - academic.oup.com
… To address these issues, a concerted effort was … data set and included much more
sophisticated machine learning approaches to improve its handling of ring cleavages and molecular

The Genomes On Line Database (GOLD) v. 2: a monitor of genome projects worldwide

K Liolios, N Tavernarakis, P Hugenholtz… - … acids research, 2006 - academic.oup.com
… The database currently incorporates information on over 1500 sequencing projects, of which
294 have been completed and the data deposited in the public databases… and diverse set of …

PseudoBase: a database with RNA pseudoknots

FHD Van Batenburg, AP Gultyaev… - … Acids Research, 2000 - academic.oup.com
data. We intend to start off with a substantial amount of pseudoknots to give the database
We expected that this would be a general problem and decided not to use the mailto feature …

The EMBL nucleotide sequence database

G Stoesser, MA Tuli, R Lopez, P Sterk - Nucleic Acids Research, 1999 - academic.oup.com
… most up-to-date data collection via Internet and World Wide … curator will assist the project
group in resolving the problems … usefulness of the molecular biology databases within Europe…

Recent improvements to the SMART domain-based sequence annotation resource

I Letunic, L Goodstadt, NJ Dickens… - … acids research, 2002 - academic.oup.com
database searching methods (3,4). Over the past 2 years, in order to augment the SMART
domain set… (15) and, in conjunction with genomic data, for the study of conservation of gene (ie …

MoonProt 2.0: an expansion and update of the moonlighting proteins database

C Chen, S Zabad, H Liu, W Wang… - … Acids Research, 2018 - academic.oup.com
database since our previous report in the Database Issue of … This database, with its collection
of information about hundreds of … are deposited in the Protein Data Bank. The MoonProt …

The EMBL nucleotide sequence database

C Kanz, P Aldebert, N Althorpe, W Baker… - … acids research, 2005 - academic.oup.com
… to link nucleotide data to other specialist molecular biology databases maintained at the EBI.
… Annotation data set was launched in response to requests from the research community to …

BacDive in 2022: the knowledge base for standardized bacterial and archaeal data

LC Reimer, J Sardà Carbasse, J Koblitz… - … Acids Research, 2022 - academic.oup.com
… well as internal databases of culture collections. BacDive represents … Therefore, the molecular
biology section was renamed to … genomic sequence information in distinct data fields. The …

Recent improvements to the PROSITE database

N Hulo, CJA Sigrist, V Le Saux… - … Acids Research, 2004 - academic.oup.com
… The PROSITE database consists of a large collection of biologically meaningful signatures
that … To circumvent this problem we allow the user to randomize non‐redundant databases. A …