BIND: the biomolecular interaction network database
… Molecular complexes and pathways are collections of these pairwise interactions, with some
additional data. The minimum … We are presently developing tools to address these issues. …
additional data. The minimum … We are presently developing tools to address these issues. …
IMGT, the international ImMunoGeneTics database
MP Lefranc - Nucleic acids research, 2001 - academic.oup.com
… TcR data of all vertebrate species (5). The concepts of classification have been used to set up
a … servers specialising in immunology, genetics, molecular biology and bioinformatics (11). …
a … servers specialising in immunology, genetics, molecular biology and bioinformatics (11). …
MODOMICS: a database of RNA modifications and related information. 2023 update
A Cappannini, A Ray, E Purta, S Mukherjee… - … Acids Research, 2024 - academic.oup.com
… The MODOMICS database was updated with recent data … , which commonly caused problems
for computational parsing … We also plan to expand the collection of synthetic modifications…
for computational parsing … We also plan to expand the collection of synthetic modifications…
The European Bioinformatics Institute's data resources: towards systems biology
C Brooksbank, G Cameron, J Thornton - Nucleic acids research, 2005 - academic.oup.com
… molecular biologists: since we last wrote about our services in the 2003 issue of Nucleic
Acids Research … efforts to collect and disseminate molecular biological data. Through …
Acids Research … efforts to collect and disseminate molecular biological data. Through …
[HTML][HTML] BioLiP2: an updated structure database for biologically relevant ligand–protein interactions
C Zhang, X Zhang, PL Freddolino… - … Acids Research, 2024 - academic.oup.com
… major improvements to address issues with BioLiP and to … protein-nucleic acid interactions,
rather than only collecting short … The funders had no role in study design, data collection and …
rather than only collecting short … The funders had no role in study design, data collection and …
Increased coverage of protein families with the blocks database servers
JG Henikoff, EA Greene, S Pietrokovski… - … acids research, 2000 - academic.oup.com
… One set of the highest-scoring blocks that are in the correct order and separated by distances
comparable to the Blocks Database is selected for analysis. If this set includes multiple …
comparable to the Blocks Database is selected for analysis. If this set includes multiple …
The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy
JR Cole, B Chai, TL Marsh, RJ Farris… - … acids research, 2003 - academic.oup.com
… Database Project-II (RDP-II) pro-vides data, tools and services related to ribosomal RNA
sequences to the research … a naïve Bayes classifier trained on a set of known type sequences …
sequences to the research … a naïve Bayes classifier trained on a set of known type sequences …
Compilation of tRNA sequences and sequences of tRNA genes
M Sprinzl, KS Vassilenko - Nucleic acids research, 2005 - academic.oup.com
… in addition to 3279 sequences of the last edition from 1998 ( 1 ) the … of general database
record used as a source of the data. … The database includes the tRNA gene sequences collected …
record used as a source of the data. … The database includes the tRNA gene sequences collected …
The biomolecular interaction network database and related tools 2005 update
C Alfarano, CE Andrade, K Anthony… - … acids research, 2005 - academic.oup.com
… that we can collect information about molecular interactions as it … scientists answer the
question ‘to what small molecule might this … SMID's underlying data originates from the PDB data …
question ‘to what small molecule might this … SMID's underlying data originates from the PDB data …
The European nucleotide archive in 2021
C Cummins, A Ahamed, R Aslam, J Burgin… - … acids research, 2022 - academic.oup.com
… in the event of validation errors or other issues. Additional tools are offered to support … set,
(a) a master record (which is still loaded into the relational database) and (b) a FASTA data …
(a) a master record (which is still loaded into the relational database) and (b) a FASTA data …