… high-dimensional to be visualized. While the computer science … that elites are found by
mutating genomes nearby in the … does not include crossover or genetic diversity via speciation. …

… visualization tools have been developed and statistical methods adapted from human genetics
… Decay of LD, as measured by r 2 against genetic distance in elite North American barley. …

… Visualizing the “haplotype mosaics” … elite genomes (section “Applications of genome
information in Prunus improvement: MAB, MAI, genomic selection, and visualization of the genome-…

… The circular haplotype mosaic visualization that helpfully displayed both proportion and
number of segments of unimproved genome in each offspring could be a useful tool for similar …

… nucleotide sequencing and phenotyping in enriching our knowledge of the genetic resources
available for introduction into elite lines. Genome-wide association studies (GWAS s) can …

… We have also developed new tools to study maize diversity, link genes to phenotype images,
and visualize pedigree data. MaizeGDB has begun incorporating RNA-seq data for B73 (24…

… D, and the genetic diversity index for the three genomes was … genome had the highest genetic
diversity and the D genome … difference in genetic diversity among the three genomes was …

… Additionally, we define ‘elite enhancers’ as those that have … For visualization purposes,
we generated a UCSC custom … enhancers and genes in the selected genomic interval (defaulted …

… methods such as PCA is a commonly used method in population genetics. BRIDGE
includes an interactive visualization of the genetic diversity space defined by PCA and t-SNE, …

… novel genetic markers for selection of varieties with high amylose content. We expect that
both the analysis methods and the genomic … We also used SplitsTree4 for visualization of the …