Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in single cells
S Pott - elife, 2017 - elifesciences.org
… measure chromatin … chromatin accessibility and endogenous DNA methylation in single
cells (scNOMe-seq). scNOMe-seq recovered characteristic accessibility and DNA methylation …
cells (scNOMe-seq). scNOMe-seq recovered characteristic accessibility and DNA methylation …
methyl-ATAC-seq measures DNA methylation at accessible chromatin
… of methylation in less accessible chromatin over gene bodies (Fig. 2E,F). Having shown that
sites of open chromatin and DNA methylation … with accessible chromatin and the methylation …
sites of open chromatin and DNA methylation … with accessible chromatin and the methylation …
Inherited DNA methylation primes the establishment of accessible chromatin during genome activation
… of accessible chromatin at these loci. Our results demonstrate a model whereby inherited
DNA methylation signatures from gametes prime the establishment of accessible chromatin …
DNA methylation signatures from gametes prime the establishment of accessible chromatin …
DNA methylation and chromatin accessibility profiling of mouse and human fetal germ cells
… of chromatin accessibility and DNA methylation within the same cells. The general patterns
of chromatin accessibility and DNA methylation … genome-wide DNA demethylation to achieve …
of chromatin accessibility and DNA methylation … genome-wide DNA demethylation to achieve …
scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells
… chromatin accessibility together with DNA methylation, we adapted Nucleosome Occupancy
and Methylation … is used to label accessible (or nucleosome depleted) DNA prior to bisulfite …
and Methylation … is used to label accessible (or nucleosome depleted) DNA prior to bisulfite …
DNA methylation-linked chromatin accessibility affects genomic architecture in Arabidopsis
… DNA methylation and chromatin accessibility, we performed assay for transposase-accessible
chromatin … show that chromatin accessibility anticorrelates with DNA methylation, as has …
chromatin … show that chromatin accessibility anticorrelates with DNA methylation, as has …
Dual detection of chromatin accessibility and DNA methylation using ATAC-Me
… For this reason, we recommend using the EZ DNA Methylation-Gold Kit (or other commercially
… regions of accessibility and quantify their methylation state at each collected time point. …
… regions of accessibility and quantify their methylation state at each collected time point. …
Alterations in chromatin accessibility and DNA methylation in clear cell renal cell carcinoma
… in chromatin accessibility in ccRCC and the majority of these events were not associated with
changes in DNA methylation … view of a cancer cell’s chromatin state and is ideally suited for …
changes in DNA methylation … view of a cancer cell’s chromatin state and is ideally suited for …
Neuronal brain-region-specific DNA methylation and chromatin accessibility are associated with neuropsychiatric trait heritability
LF Rizzardi, PF Hickey, V Rodriguez DiBlasi… - Nature …, 2019 - nature.com
… We mapped the DNA methylation landscape using WGBS of four human post-mortem brain
regions: dorsolateral prefrontal cortex (BA9), anterior cingulate cortex (BA24), hippocampus (…
regions: dorsolateral prefrontal cortex (BA9), anterior cingulate cortex (BA24), hippocampus (…
[HTML][HTML] DNA methylation: Precise modulation of chromatin structure and dynamics
… Many studies so far have produced controversial findings on how cytosine methylation
dictates DNA flexibility and accessibility, nucleosome stability and dynamics. Here, we review the …
dictates DNA flexibility and accessibility, nucleosome stability and dynamics. Here, we review the …
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