Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in single cells

S Pott - elife, 2017 - elifesciences.org
… measure chromatinchromatin accessibility and endogenous DNA methylation in single
cells (scNOMe-seq). scNOMe-seq recovered characteristic accessibility and DNA methylation

methyl-ATAC-seq measures DNA methylation at accessible chromatin

R Spektor, ND Tippens, CA Mimoso… - Genome …, 2019 - genome.cshlp.org
… of methylation in less accessible chromatin over gene bodies (Fig. 2E,F). Having shown that
sites of open chromatin and DNA methylation … with accessible chromatin and the methylation

Inherited DNA methylation primes the establishment of accessible chromatin during genome activation

G Liu, W Wang, S Hu, X Wang, Y Zhang - Genome Research, 2018 - genome.cshlp.org
… of accessible chromatin at these loci. Our results demonstrate a model whereby inherited
DNA methylation signatures from gametes prime the establishment of accessible chromatin

DNA methylation and chromatin accessibility profiling of mouse and human fetal germ cells

H Guo, B Hu, L Yan, J Yong, Y Wu, Y Gao, F Guo… - Cell research, 2017 - nature.com
… of chromatin accessibility and DNA methylation within the same cells. The general patterns
of chromatin accessibility and DNA methylation … genome-wide DNA demethylation to achieve …

scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells

SJ Clark, R Argelaguet, CA Kapourani… - Nature …, 2018 - nature.com
chromatin accessibility together with DNA methylation, we adapted Nucleosome Occupancy
and Methylation … is used to label accessible (or nucleosome depleted) DNA prior to bisulfite …

DNA methylation-linked chromatin accessibility affects genomic architecture in Arabidopsis

Z Zhong, S Feng, SH Duttke… - Proceedings of the …, 2021 - National Acad Sciences
DNA methylation and chromatin accessibility, we performed assay for transposase-accessible
chromatin … show that chromatin accessibility anticorrelates with DNA methylation, as has …

Dual detection of chromatin accessibility and DNA methylation using ATAC-Me

LN Guerin, KR Barnett, E Hodges - Nature protocols, 2021 - nature.com
… For this reason, we recommend using the EZ DNA Methylation-Gold Kit (or other commercially
… regions of accessibility and quantify their methylation state at each collected time point. …

Alterations in chromatin accessibility and DNA methylation in clear cell renal cell carcinoma

MJ Buck, LM Raaijmakers, S Ramakrishnan, D Wang… - Oncogene, 2014 - nature.com
… in chromatin accessibility in ccRCC and the majority of these events were not associated with
changes in DNA methylation … view of a cancer cell’s chromatin state and is ideally suited for …

Neuronal brain-region-specific DNA methylation and chromatin accessibility are associated with neuropsychiatric trait heritability

LF Rizzardi, PF Hickey, V Rodriguez DiBlasi… - Nature …, 2019 - nature.com
… We mapped the DNA methylation landscape using WGBS of four human post-mortem brain
regions: dorsolateral prefrontal cortex (BA9), anterior cingulate cortex (BA24), hippocampus (…

[HTML][HTML] DNA methylation: Precise modulation of chromatin structure and dynamics

S Li, Y Peng, AR Panchenko - Current opinion in structural biology, 2022 - Elsevier
… Many studies so far have produced controversial findings on how cytosine methylation
dictates DNA flexibility and accessibility, nucleosome stability and dynamics. Here, we review the …