Extensive intraspecific gene order and gene structural variations in upland cotton cultivars
Z Yang, X Ge, Z Yang, W Qin, G Sun, Z Wang… - Nature …, 2019 - nature.com
… Compared with the recently published upland cotton genome 12 , our sequences represent
an improvement in contiguity (2.52-fold against the G. hirsutum, HAU) (Supplementary Table …
an improvement in contiguity (2.52-fold against the G. hirsutum, HAU) (Supplementary Table …
Sequence-based ultra-dense genetic and physical maps reveal structural variations of allopolyploid cotton genomes
S Wang, J Chen, W Zhang, Y Hu, L Chang, L Fang… - Genome biology, 2015 - Springer
… cotton genomes has lagged behind that of other crops due to their complexity and polyploidy.
In this study, genome-… characterize the structural variations in polyploid cotton genomes. …
In this study, genome-… characterize the structural variations in polyploid cotton genomes. …
Structural variation (SV)-based pan-genome and GWAS reveal the impacts of SVs on the speciation and diversification of allotetraploid cottons
S Jin, Z Han, Y Hu, Z Si, F Dai, L He, Y Cheng, Y Li… - Molecular Plant, 2023 - cell.com
… genomes of allopolyploid cotton. The utility of this Pan-SV was then demonstrated through
population structure analysis and genome-… through crossing ELS cotton and the landrace …
population structure analysis and genome-… through crossing ELS cotton and the landrace …
High-quality genome assembly and resequencing of modern cotton cultivars provide resources for crop improvement
Z Ma, Y Zhang, L Wu, G Zhang, Z Sun, Z Li, Y Jiang… - Nature Genetics, 2021 - nature.com
… reference genome and detected the specific structural variations … structural variations by
comparing these structural variations … structural variations of Pima90 against the NDM8 genome. …
comparing these structural variations … structural variations of Pima90 against the NDM8 genome. …
Deciphering cotton genomic variations for “genes to jeans”
QH Zhu - Molecular Plant, 2023 - cell.com
… Not only different cotton species but also different varieties of the same cotton species
contain a large number of small and large sequence and structural variations, many of them …
contain a large number of small and large sequence and structural variations, many of them …
Evolutionary divergence of duplicated genomes in newly described allotetraploid cottons
… We describe genomic structural variation that arose during … to cotton biodiversity and cotton
domestication. Presence/absence variation is prominent in causing cotton genomic structural …
domestication. Presence/absence variation is prominent in causing cotton genomic structural …
[HTML][HTML] Disruption of topologically associating domains by structural variations in tetraploid cottons
Y Long, Z Liu, P Wang, H Yang, Y Wang, S Zhang… - Genomics, 2021 - Elsevier
… The high-quality genomes of two tetraploid cotton genomes have been successfully … genome
and 3D genome analysis, we observe that the 3D genome structure of allotetraploid cotton …
and 3D genome analysis, we observe that the 3D genome structure of allotetraploid cotton …
Chromosome structural variation of two cultivated tetraploid cottons and their ancestral diploid species based on a new high-density genetic map
W Wang, Z Tan, Y Xu, A Zhu, Y Li, J Yao, R Tian… - Scientific Reports, 2017 - nature.com
… tool for assaying genomic structural variation and clarifying the evolution of polyploid cotton.
A … which were newly developed based on the genome sequences of G. arboreum and G. …
A … which were newly developed based on the genome sequences of G. arboreum and G. …
Gossypium genomics: trends, scope, and utilization for cotton improvement
… of cotton genomics, provide new insights into cotton fiber development, and outline future
perspectives for genomics-enabled cotton … gene structural variations in upland cotton cultivars. …
perspectives for genomics-enabled cotton … gene structural variations in upland cotton cultivars. …
Genome resources for three modern cotton lines guide future breeding efforts
… Combined with the identification of introgressed regions, structural variation and
transcriptional response, our analyses and genome resources provide a foundation for the cotton …
transcriptional response, our analyses and genome resources provide a foundation for the cotton …