Developmental features of DNA methylation during activation of the embryonic zebrafish genome

IS Andersen, AH Reiner, H Aanes, P Aleström, P Collas - Genome biology, 2012 - Springer
zebrafish, we address here whether DNA methylation may pre-pattern early developmental
gene … Our data suggest a pre-patterning of developmental gene repression by a combination …

The Zebrafish Information Network (ZFIN): a resource for genetic, genomic and developmental research

J Sprague, E Doerry, S Douglas… - Nucleic acids …, 2001 - academic.oup.com
genomic and developmental zebrafish data, (ii) provide meaningful ways of relating genes to
mutations to facilitate the understanding of gene … mutant phenotypes and gene expression, …

Defining the boundaries of zebrafish developmental genetics

AL Felsenfeld - Nature genetics, 1996 - nature.com
… describes a reference cross panel for mapping zebrafish loci at 0.1 centiMorgans using
simple sequence polymorphisms". This is not the first zebrafish genome mapping tool", nor will it …

Evolutionary developmental biology and genomics

C Cañestro, H Yokoi, JH Postlethwait - Nature reviews genetics, 2007 - nature.com
… An informative example comes from the zebrafish co-orthologues of FGF8. Becker and
colleagues 104 randomly inserted reporters into the zebrafish genome and found four that …

[HTML][HTML] Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements

D Baranasic, M Hörtenhuber, PJ Balwierz, T Zehnder… - Nature …, 2022 - nature.com
… Here we describe the establishment and provision of a zebrafish developmental genomics
resource as a track hub and downloadable resource within a data coordination center, which …

Genome-wide survey and developmental expression mapping of zebrafish SET domain-containing genes

XJ Sun, PF Xu, T Zhou, M Hu, CT Fu, Y Zhang, Y Jin… - PloS one, 2008 - journals.plos.org
… are generated by genome-scale duplication instead of random gene duplication. In addition…
all 12 zebrafish gene pairs and the conserved syntenies between zebrafish and human were …

Understanding and editing the zebrafish genome

GK Varshney, R Sood, SM Burgess - Advances in genetics, 2015 - Elsevier
… of genetic and genomic resources and online tools that zebrafish researchers can use to …
zebrafish have many features that make them an ideal system for genetics and developmental

[HTML][HTML] Identification of cis regulatory features in the embryonic zebrafish genome through large-scale profiling of H3K4me1 and H3K4me3 binding sites

AW Aday, LJ Zhu, A Lakshmanan, J Wang… - Developmental …, 2011 - Elsevier
developmental pathways. In this study, we have applied ChIP-Seq on zebrafish embryos to
identify genomic … As in mammalian cells, we find that zebrafish promoters are enriched for …

Developmental constraints on vertebrate genome evolution

J Roux, M Robinson-Rechavi - PLoS Genetics, 2008 - journals.plos.org
… We used gene expression data from two vertebrates: zebrafish, using a microarray
experiment spanning 14 stages of development, and mouse, using EST counts for 26 stages of …

Considering the zebrafish in a comparative context

TF Schilling, J Webb - … Part B: Molecular and Developmental …, 2007 - Wiley Online Library
zebrafish biology that attempts to integrate developmental genetics with comparative studies
of other fish species. For zebrafish … clear with the sequencing of the zebrafish genome (http://…