Non-coding RNAs and DNA methylation in plants

Y Zhao, X Chen - National science review, 2014 - academic.oup.com
… methyltransferases are employed to maintain cytosine methylation at different … plant DNA
methylation studies in recent years. We first discuss the DNA methylation landscapes in plants. …

Long non-coding RNAs and their functions in plants

JA Chekanova - Current opinion in plant biology, 2015 - Elsevier
… of their mechanisms of action, with focus on plant lncRNAs, mainly in Arabidopsis thaliana,
and … of lncRNAs in RNA-dependent DNA methylation and in the regulation of flowering time. …

The pattern of DNA methylation alteration, and its association with the expression changes of non-coding RNAs and mRNAs in Moso bamboo under abiotic stress

Y Ding, LH Zou, J Wu, M Ramakrishnan, Y Gao, L Zhao… - Plant Science, 2022 - Elsevier
… explored, particularly in the area of plant hormone signaling. … stress-induced DNA methylation
alteration and non-coding RNAs … ) was used to generate DNA methylome profiles of Moso …

Continuous salt stress-induced long non-coding RNAs and DNA methylation patterns in soybean roots

R Chen, M Li, H Zhang, L Duan, X Sun, Q Jiang… - BMC genomics, 2019 - Springer
… Meanwhile, the absence of conserved lncRNA candidates among plant species reflected …
be distinct from other regulatory non-coding RNAs, such as miRNAs. DNA methylation levels of …

A pathogenic non-coding RNA induces changes in dynamic DNA methylation of ribosomal RNA genes in host plants

G Martinez, M Castellano, M Tortosa… - Nucleic acids …, 2014 - academic.oup.com
… Viroids are plant-pathogenic non-coding RNAs able to interfere with as yet poorly known
host-regulatory pathways and to cause alterations recognized as diseases. The way in which …

Replication of a pathogenic non-coding RNA increases DNA methylation in plants associated with a bromodomain-containing viroid-binding protein

DQ Lv, SW Liu, JH Zhao, BJ Zhou, SP Wang… - Scientific Reports, 2016 - nature.com
… Viroids are plant-pathogenic molecules made up of single-stranded circular non-coding
RNAs… tuber viroid (PSTVd) on interference with plant RNA silencing. Using transient induction of …

Non-coding RNA transcription and RNA-directed DNA methylation in Arabidopsis

XJ He, ZY Ma, ZW Liu - Molecular plant, 2014 - cell.com
non-coding RNAs produced by DNA-dependent RNA polymerases IV and V (Pol IV and
Pol V). Pol IV-produced non-coding RNAs are precursors of 24-nt small interfering RNAs, …

RNA‐directed DNA methylation requires stepwise binding of silencing factors to long noncoding RNA

G Böhmdorfer, MJ Rowley, J Kuciński, Y Zhu… - The Plant …, 2014 - Wiley Online Library
… as histone modifications and DNA methylation. A key event in de novo methylation of DNA
by Rd DM is the production of long noncoding RNA (lnc RNA ) by RNA polymerase V (Pol V)…

Regulation of non-coding RNAs in heat stress responses of plants

J Zhao, Q He, G Chen, L Wang, B Jin - Frontiers in Plant Science, 2016 - frontiersin.org
… We also note that DNA methylation and alternative splicing could affect miRNA expression
under heat stress, and some lncRNAs could respond to heat stress. Finally, we briefly discuss …

Stable methylation of a non-coding RNA gene regulates gene expression in response to abiotic stress in Populus simonii

Y Song, D Ci, M Tian, D Zhang - Journal of experimental botany, 2016 - academic.oup.com
… in regulating gene expression, we hypothesized that DNA methylation changes would
occur in plants exposed to different abiotic stresses and play important roles in stress-responsive …