Genome-scale DNA methylation analysis

SD Fouse, RP Nagarajan, JF Costello - Epigenomics, 2010 - Taylor & Francis
… The haploid human genome contains … DNA methylome. The methylation status of cytosines
in CpGs and occasionally in non-CpG cytosines influences protein–DNA interactions, gene

Profiling DNA methylomes from microarray to genome-scale sequencing

YW Huang, THM Huang… - Technology in cancer …, 2010 - journals.sagepub.com
… , no single method can profile the methylome in great detail. A combination of several
methodologies is needed to comprehensively interrogate DNA methylation by microarray. The …

Genome-scale DNA methylome and transcriptome profiling of human neutrophils

A Chatterjee, PA Stockwell, EJ Rodger, IM Morison - Scientific data, 2016 - nature.com
… of DNA molecules is a key mechanism associated with human disease, altered gene … Using
reduced representation bisulphite sequencing (RRBS) technology we have analysed DNA

Comparative analysis of genome-scale, base-resolution DNA methylation profiles across 580 animal species

J Klughammer, D Romanovskaia, A Nemc… - Nature …, 2023 - nature.com
… resource of vertebrate and invertebrate DNA methylomes, it showcases the power of
reference-free epigenome analysis in species for which no reference genomes are available, and it …

A genome-scale map of DNA methylation turnover identifies site-specific dependencies of DNMT and TET activity

PA Ginno, D Gaidatzis, A Feldmann, L Hoerner… - Nature …, 2020 - nature.com
… the dynamic aspect of the methylome normally masked in steady-state measurements. …
Having quantified passive demethylation at the genome scale, we sought to determine the …

[HTML][HTML] Targeted and genome-scale methylomics reveals gene body signatures in human cell lines

MP Ball, JB Li, Y Gao, JH Lee, E LeProust… - Nature …, 2009 - ncbi.nlm.nih.gov
… with high gene body methylation in highly expressed genes. Using the second method,
MSCC, we gathered genome-scale data for 1.4 million HpaII sites and confirmed that gene body …

Genome-scale analysis of DNA methylation in colorectal cancer using Infinium HumanMethylation450 BeadChips

VA Naumov, EV Generozov, NB Zaharjevskaya… - Epigenetics, 2013 - Taylor & Francis
… small genome coverage. To evaluate the diversity of methylation in CRC at the genome-scale
level, we used a new version of the lllumina HumanMethylation450 array to analyze DNA

Genome-scale oscillations in DNA methylation during exit from pluripotency

S Rulands, HJ Lee, SJ Clark, C Angermueller… - Cell systems, 2018 - cell.com
… We find evidence for genome-scale oscillatory dynamics of DNA methylation during this
transition… can be created by molecular processes, not only locally but also on the genome scale. …

Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells

MP Ball, JB Li, Y Gao, JH Lee, EM LeProust… - Nature …, 2009 - nature.com
… of low promoter methylation and high gene-body methylation in highly expressed …
genome-scale data for ∼1.4 million HpaII sites in the DNA of B-lymphocytes and confirmed that gene

MetMap enables genome-scale Methyltyping for determining methylation states in populations

M Singer, D Boffelli, J Dhahbi… - PLoS Computational …, 2010 - journals.plos.org
methylomes). Such comparative studies rely both on the ability to obtain genome-scale
Methods used to annotate them on a genomic scale have been based only on sequence …