Genome-scale DNA methylation analysis
SD Fouse, RP Nagarajan, JF Costello - Epigenomics, 2010 - Taylor & Francis
… The haploid human genome contains … DNA methylome. The methylation status of cytosines
in CpGs and occasionally in non-CpG cytosines influences protein–DNA interactions, gene …
in CpGs and occasionally in non-CpG cytosines influences protein–DNA interactions, gene …
Profiling DNA methylomes from microarray to genome-scale sequencing
YW Huang, THM Huang… - Technology in cancer …, 2010 - journals.sagepub.com
… , no single method can profile the methylome in great detail. A combination of several
methodologies is needed to comprehensively interrogate DNA methylation by microarray. The …
methodologies is needed to comprehensively interrogate DNA methylation by microarray. The …
Genome-scale DNA methylome and transcriptome profiling of human neutrophils
… of DNA molecules is a key mechanism associated with human disease, altered gene … Using
reduced representation bisulphite sequencing (RRBS) technology we have analysed DNA …
reduced representation bisulphite sequencing (RRBS) technology we have analysed DNA …
Comparative analysis of genome-scale, base-resolution DNA methylation profiles across 580 animal species
J Klughammer, D Romanovskaia, A Nemc… - Nature …, 2023 - nature.com
… resource of vertebrate and invertebrate DNA methylomes, it showcases the power of
reference-free epigenome analysis in species for which no reference genomes are available, and it …
reference-free epigenome analysis in species for which no reference genomes are available, and it …
A genome-scale map of DNA methylation turnover identifies site-specific dependencies of DNMT and TET activity
PA Ginno, D Gaidatzis, A Feldmann, L Hoerner… - Nature …, 2020 - nature.com
… the dynamic aspect of the methylome normally masked in steady-state measurements. …
Having quantified passive demethylation at the genome scale, we sought to determine the …
Having quantified passive demethylation at the genome scale, we sought to determine the …
[HTML][HTML] Targeted and genome-scale methylomics reveals gene body signatures in human cell lines
… with high gene body methylation in highly expressed genes. Using the second method,
MSCC, we gathered genome-scale data for 1.4 million HpaII sites and confirmed that gene body …
MSCC, we gathered genome-scale data for 1.4 million HpaII sites and confirmed that gene body …
Genome-scale analysis of DNA methylation in colorectal cancer using Infinium HumanMethylation450 BeadChips
VA Naumov, EV Generozov, NB Zaharjevskaya… - Epigenetics, 2013 - Taylor & Francis
… small genome coverage. To evaluate the diversity of methylation in CRC at the genome-scale
level, we used a new version of the lllumina HumanMethylation450 array to analyze DNA …
level, we used a new version of the lllumina HumanMethylation450 array to analyze DNA …
Genome-scale oscillations in DNA methylation during exit from pluripotency
… We find evidence for genome-scale oscillatory dynamics of DNA methylation during this
transition… can be created by molecular processes, not only locally but also on the genome scale. …
transition… can be created by molecular processes, not only locally but also on the genome scale. …
Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells
… of low promoter methylation and high gene-body methylation in highly expressed …
genome-scale data for ∼1.4 million HpaII sites in the DNA of B-lymphocytes and confirmed that gene…
genome-scale data for ∼1.4 million HpaII sites in the DNA of B-lymphocytes and confirmed that gene…
MetMap enables genome-scale Methyltyping for determining methylation states in populations
… methylomes). Such comparative studies rely both on the ability to obtain genome-scale …
Methods used to annotate them on a genomic scale have been based only on sequence …
Methods used to annotate them on a genomic scale have been based only on sequence …
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