On how mammalian transcription factors recognize methylated DNA
BA Buck-Koehntop, PA Defossez - Epigenetics, 2013 - Taylor & Francis
… three structural families: methyl-CpG binding domain (… to methylated DNA have been
previously determined and shown to exhibit two very different modes of methylated DNA recognition…
previously determined and shown to exhibit two very different modes of methylated DNA recognition…
Recognition of methylated DNA by TAL effectors
… These results illustrate the specific nature of mC recognition by … methylated and unmethylated
cytosine. Binding of mC by TALE repeat through the RVD NG extends the DNA recognition …
cytosine. Binding of mC by TALE repeat through the RVD NG extends the DNA recognition …
Structural insights into methylated DNA recognition by the C-terminal zinc fingers of the DNA reader protein ZBTB38
NO Hudson, FG Whitby, BA Buck-Koehntop - Journal of Biological …, 2018 - ASBMB
Methyl-CpG–binding proteins (MBPs) are selective readers of DNA methylation that play an
essential role in mediating cellular transcription processes in both normal and diseased cells…
essential role in mediating cellular transcription processes in both normal and diseased cells…
Recognition of methylated DNA through methyl-CpG binding domain proteins
… In this article, we demonstrate that the methyl-CpG dinucleotides are recognized at the MBD…
the methyl-cytosine recognition process and demonstrate that methylation enhances MBD–…
the methyl-cytosine recognition process and demonstrate that methylation enhances MBD–…
Dynamic protein–DNA recognition: beyond what can be seen
… Through several examples (Table 1), we demonstrate that ID segments outside the binding
context can influence DNA recognition. Transient contacts with the DNA binding site can …
context can influence DNA recognition. Transient contacts with the DNA binding site can …
Effect of cytosine methylation on DNA-DNA recognition at CpG steps
C Mayer-Jung, D Moras, Y Timsit - Journal of molecular biology, 1997 - Elsevier
… methylation can promote DNA-DNA recognition at methylated CpG sequences, both by
decreasing DNA … This observation fits well with current data, which indicate that methylation …
decreasing DNA … This observation fits well with current data, which indicate that methylation …
DNA recognition by the methyl-CpG binding domain of MeCP2
A Free, RID Wakefield, BO Smith, DTF Dryden… - Journal of Biological …, 2001 - ASBMB
… DNA in an equivalent manner. These authors also proposed a similar model for DNA recognition
… chains within the binding face affected methyl-DNA recognition in mobility shift assays. …
… chains within the binding face affected methyl-DNA recognition in mobility shift assays. …
Sequence-specific recognition of methylated DNA by human zinc-finger proteins
N Sasai, M Nakao, PA Defossez - Nucleic acids research, 2010 - academic.oup.com
… methylated DNA in a sequence-specific manner: the nucleotides surrounding the methylated
… ZBTB4 residues involved in DNA recognition. ( A ) To chelate zinc ions, GST-ZBTB4 was …
… ZBTB4 residues involved in DNA recognition. ( A ) To chelate zinc ions, GST-ZBTB4 was …
Structural basis for Klf4 recognition of methylated DNA
Y Liu, YO Olanrewaju, Y Zheng… - Nucleic acids …, 2014 - academic.oup.com
… An arginine and a glutamate interact with the methyl group. By comparison with two other …
with methylated DNA, we propose a common principle of recognition of methylated CpG by …
with methylated DNA, we propose a common principle of recognition of methylated CpG by …
Towards an understanding of DNA recognition by the methyl-CpG binding domain 1
C Rauch, M Trieb, FR Wibowo… - Journal of …, 2005 - Taylor & Francis
… methyl-CpG binding domain (MBDs). Based on the NMR structure of MBD1 complexed with
methylated DNA we analysed the recognition … methylated CpG step, the recognition mode is …
methylated DNA we analysed the recognition … methylated CpG step, the recognition mode is …