… For rapid and effortless structure analysis, we have developed a new automatic refinement
… of protein structural refinement automatically with the refinement programs CNS1.1 (CNS v.…

… To identify the major deficiencies in our search algorithm, we analyzed the non-native
structural features in the refined low RMSD and low RMSD* models generated in Test 4. We also …

… protein structure refinement is to take approximate initial template-based models and bring
them closer to the true native structure… variety of further computational analyses. An important …

… Data Bank (PDB) format) of the target are the only required inputs to refine protein structures
and … Energy functions derived from the statistical analysis of known structures typically have …

… the protein structure for the refinement process. The job name is required to keep track of the
refined structure and … Additionally, an optional post refinement analysis of refinement can be …

… perform a detailed analysis on the local structural qualities of … and efficient method in protein
structure refinement. The success … inexpensive way for CASP refinement targets, where the …

… to be important for successful protein structure refinement, such as force fields, statistical
potentials, restraints, solvent conditions, and trajectory analysis. We believe that these should …

… the refinement of the structure of plastocyanin at 1.33 A resolution, and discuss the more
detailed structural … of a number of crystallographic refinement variables to the accuracy and …

… analysis. A comprehensive measure of the extent of structural changes caused by the refinement
process … Analysis of intermediate stages of the refinement process is not performed due …

… Before embarking on the main refinement process, which involves density modification, we
have often found it advantageous to produce a semi-sharpened Patterson sum-function map …