The complete chloroplast genome of Cicer reticulatum and comparative analysis against relative Cicer species

E Mehmetoğlu, Y Kaymaz, D Ateş, A Kahraman… - Scientific Reports, 2023 - nature.com
The chloroplast (cp) genome is an adequate genomic resource to investigate evolutionary
relationships among plant species and it carries marker genes available for species …

The Complete Chloroplast Genome Sequences of the Medicinal Plant Forsythia suspensa (Oleaceae)

W Wang, H Yu, J Wang, W Lei, J Gao, X Qiu… - International Journal of …, 2017 - mdpi.com
Forsythia suspensa is an important medicinal plant and traditionally applied for the treatment
of inflammation, pyrexia, gonorrhea, diabetes, and so on. However, there is limited …

陆地棉叶绿体基因组密码子使用偏性的分析

尚明照, 刘方, 华金平, 王坤波 - 中国农业科学, 2011 - chinaagrisci.com
[Objective] The codon usage bias in Gossypium hirsutum chloroplast genome was analyzed
to find the factors affecting the formation of codon bias.[Method] Codon of fifty genes which …

Assembling and analysis of the whole chloroplast genome sequence of Elaeagnus angustifolia and its codon usage bias

王婧, 王天翼, 王罗云, 张建国… - Acta Bot. Boreal …, 2019 - xbzwxb.cnjournals.com
该研究以 2 株野生沙 f (犈犾犪犲犪犵狀狌狊犪狀犵狌狊狋犻犳狅犾犻犪 Linn.)
嫩枝经温室水培后的嫩叶为材料, 采用 CTAB 法分别提取总 DNA, 并利用第二代测序技术进行总 …

Selection on the codon bias of chloroplast and cyanelle genes in different plant and algal lineages

BR Morton - Journal of molecular evolution, 1998 - Springer
In the plant chloroplast genome the codon usage of the highly expressed psbA gene is
unique and is adapted to the tRNA population, probably due to selection for translation …

Mechanisms governing codon usage bias and the implications for protein expression in the chloroplast of Chlamydomonas reinhardtii

M Fages‐Lartaud, K Hundvin… - The Plant …, 2022 - Wiley Online Library
Chloroplasts possess a considerably reduced genome that is decoded via an almost
minimal set of tRNAs. These features make an excellent platform for gaining insights into …

Context-dependent mutation dynamics, not selection, explains the codon usage bias of most angiosperm chloroplast genes

BR Morton - Journal of Molecular Evolution, 2022 - Springer
Two competing proposals about the degree to which selection affects codon usage of
angiosperm chloroplast genes are examined. The first, based on observations that codon …

Analysis of Codon Usage Patterns of Six Sequenced Brachypodium distachyon Lines Reveals a Declining CG Skew of the CDSs from the 5′-ends to the 3′-ends

J Wang, Y Lin, M Xi - Genes, 2021 - mdpi.com
Brachypodium distachyon, a new monocotyledonous model plant, has received wide
attention in biological research due to its small genome and numerous genetic resources …

Complete Chloroplast Genome of Clethra fargesii Franch., an Original Sympetalous Plant from Central China: Comparative Analysis, Adaptive Evolution, and …

S Ding, X Dong, J Yang, C Guo, B Cao, Y Guo, G Hu - Forests, 2021 - mdpi.com
Clethra fargesii, an essential ecological and endemic woody plant of the genus Clethra in
Clethraceae, is widely distributed in Central China. So far, there have been a paucity of …

Complete Chloroplast Genome Sequences from Korean Ginseng (Panax schinseng Nees) and Comparative Analysis of Sequence Evolution among 17 Vascular …

KJ Kim, HL Lee - DNA research, 2004 - academic.oup.com
The nucleotide sequence of Korean ginseng (Panax schinseng Nees) chloroplast genome
has been completed (AY582139). The circular double-stranded DNA, which consists of …