Comparative analyses of six complete chloroplast genomes from the genus Cupressus and Juniperus (Cupressaceae)
C Chen, X Xia, J Peng, D Wang - Gene, 2022 - Elsevier
Cupressaceae is a conifer family distributed around the world. Cupressus and Juniperus are
the main genera of the Cupressaceae family and have important medicinal value. This leads …
the main genera of the Cupressaceae family and have important medicinal value. This leads …
Patterns of genome-wide codon usage bias in tobacco, tomato and potato
Understanding codon usage patterns and their shaping factors in members of the
Solanaceae family may reflect important features of their evolutionary history. Here, we …
Solanaceae family may reflect important features of their evolutionary history. Here, we …
[PDF][PDF] Patterns of synonymous codon usage bias in the model grass Brachypodium distachyon
H Liu, Y Huang, X Du, Z Chen, X Zeng, Y Chen… - Genet Mol …, 2012 - geneticsmr.com
Brachypodium distachyon has been proposed as a new model for the temperate grass
because it is related to the major cereal grain species (such as wheat, barley, oat, maize …
because it is related to the major cereal grain species (such as wheat, barley, oat, maize …
[HTML][HTML] Genome-wide analysis of codon usage bias in four sequenced cotton species
L Wang, H Xing, Y Yuan, X Wang, M Saeed, J Tao… - PloS one, 2018 - journals.plos.org
Codon usage bias (CUB) is an important evolutionary feature in a genome which provides
important information for studying organism evolution, gene function and exogenous gene …
important information for studying organism evolution, gene function and exogenous gene …
Comparative analysis of expressed sequences reveals a conserved pattern of optimal codon usage in plants
L Wang, MJ Roossinck - Plant molecular biology, 2006 - Springer
Codon usage bias is a ubiquitous phenomenon, which may be caused by mutational bias,
selection, or both. The patterns of codon usage in plants are not well understood. Datasets …
selection, or both. The patterns of codon usage in plants are not well understood. Datasets …
[HTML][HTML] Codon usage patterns across seven Rosales species
Y Zhang, Z Shen, X Meng, L Zhang, Z Liu, M Liu… - BMC plant biology, 2022 - Springer
Background Codon usage bias (CUB) analysis is an effective method for studying specificity,
evolutionary relationships, and mRNA translation and discovering new genes among …
evolutionary relationships, and mRNA translation and discovering new genes among …
[HTML][HTML] Genome-Wide Analysis of Codon Usage Bias in Epichloë festucae
X Li, H Song, Y Kuang, S Chen, P Tian, C Li… - International journal of …, 2016 - mdpi.com
Analysis of codon usage data has both practical and theoretical applications in
understanding the basics of molecular biology. Differences in codon usage patterns among …
understanding the basics of molecular biology. Differences in codon usage patterns among …
[HTML][HTML] Synonymous codon usage bias in plant mitochondrial genes is associated with intron number and mirrors species evolution
W Xu, T Xing, M Zhao, X Yin, G Xia, M Wang - PLoS One, 2015 - journals.plos.org
Synonymous codon usage bias (SCUB) is a common event that a non-uniform usage of
codons often occurs in nearly all organisms. We previously found that SCUB is correlated …
codons often occurs in nearly all organisms. We previously found that SCUB is correlated …
[HTML][HTML] Comprehensive analysis of correlations among codon usage bias, gene expression, and substitution rate in Arachis duranensis and Arachis ipaënsis …
H Song, H Gao, J Liu, P Tian, Z Nan - Scientific reports, 2017 - nature.com
The relationship between evolutionary rates and gene expression in model plant orthologs
is well documented. However, little is known about the relationships between gene …
is well documented. However, little is known about the relationships between gene …
Analysis of Codon Usage Bias in the chloroplast genome of Helianthus annuus J-01
SY Chen, H Zhang, X Wang, YH Zhang… - … Series: Earth and …, 2021 - iopscience.iop.org
In order to determine the usage of the codon against Helianthus annuus chloroplast
genome, this study used Codon W 1.4. 2 and online software CUSP to perform neutral …
genome, this study used Codon W 1.4. 2 and online software CUSP to perform neutral …