Comparative analyses of six complete chloroplast genomes from the genus Cupressus and Juniperus (Cupressaceae)

C Chen, X Xia, J Peng, D Wang - Gene, 2022 - Elsevier
Cupressaceae is a conifer family distributed around the world. Cupressus and Juniperus are
the main genera of the Cupressaceae family and have important medicinal value. This leads …

Patterns of genome-wide codon usage bias in tobacco, tomato and potato

AM Anwar, M Aljabri, M El-Soda - … & Biotechnological Equipment, 2021 - Taylor & Francis
Understanding codon usage patterns and their shaping factors in members of the
Solanaceae family may reflect important features of their evolutionary history. Here, we …

[PDF][PDF] Patterns of synonymous codon usage bias in the model grass Brachypodium distachyon

H Liu, Y Huang, X Du, Z Chen, X Zeng, Y Chen… - Genet Mol …, 2012 - geneticsmr.com
Brachypodium distachyon has been proposed as a new model for the temperate grass
because it is related to the major cereal grain species (such as wheat, barley, oat, maize …

[HTML][HTML] Genome-wide analysis of codon usage bias in four sequenced cotton species

L Wang, H Xing, Y Yuan, X Wang, M Saeed, J Tao… - PloS one, 2018 - journals.plos.org
Codon usage bias (CUB) is an important evolutionary feature in a genome which provides
important information for studying organism evolution, gene function and exogenous gene …

Comparative analysis of expressed sequences reveals a conserved pattern of optimal codon usage in plants

L Wang, MJ Roossinck - Plant molecular biology, 2006 - Springer
Codon usage bias is a ubiquitous phenomenon, which may be caused by mutational bias,
selection, or both. The patterns of codon usage in plants are not well understood. Datasets …

[HTML][HTML] Codon usage patterns across seven Rosales species

Y Zhang, Z Shen, X Meng, L Zhang, Z Liu, M Liu… - BMC plant biology, 2022 - Springer
Background Codon usage bias (CUB) analysis is an effective method for studying specificity,
evolutionary relationships, and mRNA translation and discovering new genes among …

[HTML][HTML] Genome-Wide Analysis of Codon Usage Bias in Epichloë festucae

X Li, H Song, Y Kuang, S Chen, P Tian, C Li… - International journal of …, 2016 - mdpi.com
Analysis of codon usage data has both practical and theoretical applications in
understanding the basics of molecular biology. Differences in codon usage patterns among …

[HTML][HTML] Synonymous codon usage bias in plant mitochondrial genes is associated with intron number and mirrors species evolution

W Xu, T Xing, M Zhao, X Yin, G Xia, M Wang - PLoS One, 2015 - journals.plos.org
Synonymous codon usage bias (SCUB) is a common event that a non-uniform usage of
codons often occurs in nearly all organisms. We previously found that SCUB is correlated …

[HTML][HTML] Comprehensive analysis of correlations among codon usage bias, gene expression, and substitution rate in Arachis duranensis and Arachis ipaënsis …

H Song, H Gao, J Liu, P Tian, Z Nan - Scientific reports, 2017 - nature.com
The relationship between evolutionary rates and gene expression in model plant orthologs
is well documented. However, little is known about the relationships between gene …

Analysis of Codon Usage Bias in the chloroplast genome of Helianthus annuus J-01

SY Chen, H Zhang, X Wang, YH Zhang… - … Series: Earth and …, 2021 - iopscience.iop.org
In order to determine the usage of the codon against Helianthus annuus chloroplast
genome, this study used Codon W 1.4. 2 and online software CUSP to perform neutral …