Analysis of codon usage patterns of the chloroplast genomes in the Poaceae family

Y Zhang, X Nie, X Jia, C Zhao, SS Biradar… - Australian Journal of …, 2012 - CSIRO Publishing
Codon usage patterns of 23 Poaceae chloroplast genomes were analysed in this study.
Neutrality analysis indicated that the codon usage patterns have significant correlations with …

Comparative analysis of codon usage patterns in chloroplast genomes of the Asteraceae family

X Nie, P Deng, K Feng, P Liu, X Du, FM You… - Plant molecular biology …, 2014 - Springer
Codon usage bias (CUB) is an important evolutionary feature in a genome and has been
widely documented from prokaryotes to eukaryotes. However, the significance of CUB in the …

[HTML][HTML] Comparative analysis of codon bias in the chloroplast genomes of theaceae species

Z Wang, Q Cai, Y Wang, M Li, C Wang, Z Wang… - Frontiers in …, 2022 - frontiersin.org
Theaceae species are dicotyledonous angiosperms with extremely high ornamental and
economic value. The chloroplast genome is traditionally used to study species evolution …

[HTML][HTML] Synonymous codon usage in chloroplast genome of Coffea arabica

RR Nair, MB Nandhini, E Monalisha, K Murugan… - …, 2012 - ncbi.nlm.nih.gov
Synonymous codon usage of 53 protein coding genes in chloroplast genome of Coffea
arabica was analyzed for the first time to find out the possible factors contributing codon …

Patterns of synonymous codon usage bias in chloroplast genomes of seed plants

M Zhou, W Long, X Li - Forestry Studies in China, 2008 - Springer
Codon usage in chloroplast genome of six seed plants (Arabidopsis thaliana, Populus alba,
Zea mays, Triticum aestivum, Pinus koraiensis and Cycas taitungensis) was analyzed to find …

[HTML][HTML] Codon usage profiling of chloroplast genome in Juglandaceae

Y Zeng, L Shen, S Chen, S Qu, N Hou - Forests, 2023 - mdpi.com
Juglandaceae (walnut) is made up of several economically and ecologically valuable tree
species. Chloroplasts, vitally important for plant growth, are also a rich source of genetic and …

Analysis of synonymous codon usage in chloroplast genome of Populus alba

M Zhou, W Long, X Li - Journal of Forestry Research, 2008 - Springer
The pattern of codon usage in the chloroplast genome of Populus alba was investigated.
Correspondence analysis (a commonly used multivariate statistical approach) and method …

Synonymous Codon Usage, GC3, and Evolutionary Patterns Across Plastomes of Three Pooid Model Species: Emerging Grass Genome Models for Monocots

G Sablok, KC Nayak, F Vazquez, TV Tatarinova - Molecular Biotechnology, 2011 - Springer
We have analyzed factors affecting the codon usage pattern of the chloroplasts genomes of
representative species of pooid grass family. Correspondence analysis of relative …

Codon usage profiling of chloroplast genome in Magnoliaceae.

K Ji, X Song, C Chen, G Li, S Xie - 2020 - cabidigitallibrary.org
Magnoliaceae is primitive angiosperm with important economic, medicinal and ornamental
values. Caton is the core element of translation in central dogma, and its characterics …

Analysis of codon usage bias of chloroplast genes in Oryza species: Codon usage of chloroplast genes in Oryza species

S Chakraborty, S Yengkhom, A Uddin - Planta, 2020 - Springer
Main conclusion The codon usage bias in chloroplast genes of Oryza species was low and
AT rich. The pattern of codon usage was different among Oryza species and mainly …