[HTML][HTML] Molecular characterizations of genes in chloroplast genomes of the genus Arachis L. (Fabaceae) based on the codon usage divergence

S Yang, G Li, H Li - Plos one, 2023 - journals.plos.org
Studies on the molecular characteristics of chloroplast genome are generally important for
clarifying the evolutionary processes of plant species. The base composition, the effective …

[HTML][HTML] Comparative analysis of codon bias in the chloroplast genomes of theaceae species

Z Wang, Q Cai, Y Wang, M Li, C Wang, Z Wang… - Frontiers in …, 2022 - frontiersin.org
Theaceae species are dicotyledonous angiosperms with extremely high ornamental and
economic value. The chloroplast genome is traditionally used to study species evolution …

Codon usage pattern and genetic diversity in chloroplast genomes of Panicum species

G Li, L Zhang, P Xue - Gene, 2021 - Elsevier
Exploring the molecular identities and the genetic diversity of a plant species is crucial in
figuring out the evolutionary pressure of genes as well as in molecular breeding application …

Comparative Analysis on the Codon Usage Pattern of the Chloroplast Genomes in Malus Species

G Li, L Zhang, P Xue, M Zhu - Biochemical Genetics, 2023 - Springer
Codon usage bias of coding sequences has been usually used for exploring the
evolutionary factors that affect the variation of genes. We took 20 chloroplast genomes of …

Codon usage bias analysis of the chloroplast genome of Bothriochloa ischaemum

SY Gao, YY Li, ZQ Yang, KH Dong… - Acta Prataculturae …, 2023 - cyxb.magtech.com.cn
The chloroplast genome is highly conserved and has a slow evolutionary rate. The study of
chloroplast genome codon bias could clarify the expression efficiency of genes, and could …

[HTML][HTML] Evolutionary dynamics of chloroplast genomes in subfamily Aroideae (Araceae)

CL Henriquez, I Ahmed, MM Carlsen, A Zuluaga… - Genomics, 2020 - Elsevier
Aroideae is the largest and most diverse subfamily of the plant family Araceae. Despite its
agricultural and horticultural importance, the genomic resources are sparse for this …

[HTML][HTML] Chloroplast genomes of Arabidopsis halleri ssp. gemmifera and Arabidopsis lyrata ssp. petraea: Structures and comparative analysis

S Asaf, AL Khan, MA Khan, M Waqas, SM Kang… - Scientific reports, 2017 - nature.com
We investigated the complete chloroplast (cp) genomes of non-model Arabidopsis halleri
ssp. gemmifera and Arabidopsis lyrata ssp. petraea using Illumina paired-end sequencing to …

Analysis of codon usage bias and evolution in the chloroplast genome of Mesona chinensis Benth

D Tang, F Wei, Z Cai, Y Wei, A Khan, J Miao… - Development Genes and …, 2021 - Springer
Mesona chinensis Benth (MCB) is one of the main economic crops in tropical and
subtropical areas. To understand the codon usage bias (CUB) in M. chinensis Benth …

The complete chloroplast genome sequence of Aster spathulifolius (Asteraceae); genomic features and relationship with Asteraceae

KS Choi, SJ Park - Gene, 2015 - Elsevier
Aster spathulifolius, a member of the Asteraceae family, is distributed along the coast of
Japan and Korea. This plant is used for medicinal and ornamental purposes. The complete …

Codon usage by chloroplast gene is bias in Hemiptelea davidii

H Liu, Y Lu, B Lan, J Xu - Journal of Genetics, 2020 - Springer
The base composition of the chloroplast genes is of great interest because they play a highly
significant role in the evolutionary development of the plants. Evaluation of the 48 …